Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 2.0e-227 792.0 374 100.0
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 6.2e-208 727.2 374 89.6
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.0e-202 709.9 374 89.0
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 3.1e-199 698.4 374 85.8
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.5e-198 696.0 373 85.3
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.9e-193 679.1 375 83.7
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 2.5e-193 678.7 371 84.4
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.9e-188 662.5 373 82.0
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 5.1e-186 654.4 374 79.9
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.5e-185 652.9 374 79.9
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 5.6e-185 651.0 372 76.6
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 8.2e-184 647.1 383 78.1
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.8e-183 646.0 373 79.9
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.2e-182 643.3 372 77.2
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 1.2e-182 643.3 374 77.5
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.2e-182 643.3 374 77.5
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 2.0e-182 642.5 372 78.2
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 2.6e-182 642.1 373 77.2
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.0e-181 640.2 374 77.0
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.9e-181 638.6 373 76.9
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.1e-180 636.7 373 78.8
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.4e-180 636.3 373 77.2
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.4e-180 636.3 373 76.4
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.4e-180 636.3 373 78.8
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.9e-180 636.0 372 77.2
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 3.2e-180 635.2 373 77.2
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 4.2e-180 634.8 373 76.1
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 4.2e-180 634.8 371 78.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 5.5e-180 634.4 373 75.6
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 4.6e-179 631.3 372 76.1
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 6.0e-179 630.9 373 76.1
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.0e-178 630.2 372 75.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-178 629.8 373 74.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.3e-178 629.8 373 76.1
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 3.0e-178 628.6 383 75.2
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 3.0e-178 628.6 371 76.5
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 3.0e-178 628.6 373 72.9
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 3.9e-178 628.2 372 76.1
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 3.9e-178 628.2 371 76.3
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 6.7e-178 627.5 374 77.5
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 6.7e-178 627.5 372 75.0
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.7e-178 627.1 373 73.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.5e-177 626.3 372 75.8
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.9e-177 625.9 373 75.6
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 4.3e-177 624.8 379 74.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 4.3e-177 624.8 371 75.7
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.3e-176 623.2 367 75.7
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.2e-176 622.5 372 73.9
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.8e-176 622.1 371 75.7
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 3.7e-176 621.7 366 75.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 8.2e-176 620.5 373 74.3
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.4e-175 619.8 372 74.7
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.8e-175 619.4 372 75.3
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 3.1e-175 618.6 368 75.0
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.1e-175 618.6 391 71.4
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 3.1e-175 618.6 375 76.8
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 6.9e-175 617.5 371 74.4
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.5e-174 616.3 372 74.5
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 4.5e-174 614.8 373 74.0
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 5.9e-174 614.4 367 73.3
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 5.9e-174 614.4 372 73.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.3e-173 613.2 372 73.1
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 6.5e-173 610.9 369 74.5
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 8.5e-173 610.5 369 74.0
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 8.5e-173 610.5 367 74.9
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.4e-172 609.8 372 73.4
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.9e-172 609.4 374 73.0
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.9e-172 609.4 374 73.3
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 5.5e-172 607.8 372 72.3
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.2e-171 606.7 373 73.2
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 3.6e-171 605.1 369 73.7
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 7.9e-171 604.0 371 73.3
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 1.0e-170 603.6 375 72.8
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.4e-170 603.2 369 74.0
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 1.8e-170 602.8 370 74.1
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.8e-170 602.8 366 74.0
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.3e-170 602.4 370 74.1
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 6.7e-170 600.9 370 73.8
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.5e-169 599.7 369 74.0
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 1.9e-169 599.4 370 73.5
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 2.5e-169 599.0 369 72.9
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 3.3e-169 598.6 370 73.5
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 4.3e-169 598.2 374 72.7
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-168 596.7 349 78.2
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.2e-168 595.9 369 74.0
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 2.2e-168 595.9 357 73.9
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 2.8e-168 595.5 369 72.6
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 6.3e-168 594.3 371 73.0
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 8.2e-168 594.0 370 72.4
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 3.4e-166 588.6 373 71.6
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 5.0e-165 584.7 372 70.4
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.9e-164 582.8 368 71.2
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 5.5e-164 581.3 383 71.0
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.2e-163 580.1 400 67.0
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.7e-163 578.2 372 68.5
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 6.1e-163 577.8 380 70.5
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 7.9e-163 577.4 372 71.2
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 2.6e-161 572.4 369 70.7
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 6.3e-160 567.8 370 71.1
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 8.2e-160 567.4 373 68.9
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 8.2e-160 567.4 458 59.6
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 4.1e-159 565.1 378 69.3
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 7.0e-159 564.3 293 88.7
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.3e-157 560.1 371 68.5
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 6.5e-157 557.8 420 63.6
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 8.5e-157 557.4 408 65.9
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 8.0e-155 550.8 403 64.8
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.7e-153 544.7 375 66.7
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.3e-152 543.5 328 73.2
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.6e-150 536.6 371 66.0
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 5.9e-150 534.6 370 64.6
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.0e-149 533.9 370 67.3
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 3.8e-149 531.9 373 63.8
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 5.2e-146 521.5 367 64.3
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 7.5e-145 517.7 308 77.6
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 9.7e-145 517.3 374 62.0
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 4.8e-144 515.0 361 65.7
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 7.2e-140 501.1 374 64.7
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 3.4e-137 492.3 414 58.7
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 2.8e-131 472.6 385 61.8
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 9.2e-127 457.6 385 58.7
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 3.6e-123 445.7 274 74.5
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.6e-107 393.7 344 57.8
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.9e-98 361.3 250 66.4
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.5e-97 360.5 216 74.1
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.2e-94 350.9 222 70.7
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 5.1e-93 345.5 383 47.0
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-92 344.0 231 67.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.7e-88 330.5 383 45.7
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.3e-84 315.8 374 43.9
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 5.6e-84 315.5 396 43.9
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-80 303.5 204 67.2
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.2e-75 285.4 165 73.3
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 7.9e-70 268.5 170 67.1
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.6e-62 244.2 171 67.3
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.0e-45 188.3 477 28.5
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 1.3e-43 181.4 94 85.1
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 8.0e-38 162.2 85 91.8
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.6e-36 157.1 129 66.7
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 2.6e-33 147.1 105 65.7
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 3.5e-33 146.7 105 65.7
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 3.5e-25 120.2 91 62.6
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 3.0e-21 107.1 339 26.5
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 2.6e-20 104.0 163 38.0
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.2e-17 95.1 157 37.6
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 5.0e-16 89.7 47 85.1
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.1e-15 88.6 46 82.6
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.0e-13 82.0 43 79.1
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.2e-12 78.6 41 82.9


User provided reference genes

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