Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.3e-60 236.1 112 100.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 2.3e-49 198.7 105 92.4
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 7.6e-45 183.7 105 86.7
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.3e-44 183.0 95 93.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.3e-41 172.9 103 81.6
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 6.9e-38 160.6 105 77.1
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 3.4e-37 158.3 102 78.4
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 5.5e-35 151.0 108 73.1
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 3.0e-33 145.2 108 66.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 3.0e-33 145.2 108 66.7
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.1e-32 143.3 108 67.6
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.5e-32 142.9 109 66.1
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 9.7e-32 140.2 109 65.1
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.3e-31 139.8 108 65.7
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.2e-31 139.0 109 66.1
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 6.9e-30 134.0 109 64.2
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 6.9e-30 134.0 109 64.2
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 2.0e-29 132.5 108 63.9
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.6e-29 132.1 109 60.6
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 3.4e-29 131.7 109 63.3
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 4.5e-29 131.3 107 62.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 5.9e-29 131.0 109 63.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 5.9e-29 131.0 109 63.3
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.0e-28 130.2 107 63.6
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.7e-28 129.4 110 61.8
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.2e-28 129.0 109 63.3
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.9e-28 128.6 109 61.5
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 6.5e-28 127.5 109 62.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 8.5e-28 127.1 86 70.9
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.4e-27 126.3 106 64.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.9e-27 125.9 83 72.3
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.9e-27 125.9 112 60.7
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.9e-27 125.9 109 60.6
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.5e-27 125.6 109 62.4
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 3.2e-27 125.2 102 63.7
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.2e-27 125.2 102 63.7
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.2e-27 125.2 102 63.7
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 5.5e-27 124.4 109 60.6
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 5.5e-27 124.4 111 61.3
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.5e-27 124.4 83 71.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 5.5e-27 124.4 109 58.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 7.2e-27 124.0 106 59.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 7.2e-27 124.0 102 63.7
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.1e-26 122.5 92 64.1
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 3.6e-26 121.7 83 72.3
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 3.6e-26 121.7 83 69.9
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 3.6e-26 121.7 111 60.4
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 4.7e-26 121.3 109 59.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 4.7e-26 121.3 105 61.0
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 6.1e-26 120.9 109 60.6
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 6.1e-26 120.9 83 67.5
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 8.0e-26 120.6 109 58.7
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.4e-25 119.8 83 69.9
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.8e-25 119.4 109 56.9
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.8e-25 119.4 83 68.7
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 1.8e-25 119.4 84 70.2
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.3e-25 119.0 83 68.7
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 2.3e-25 119.0 103 59.2
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 3.9e-25 118.2 109 59.6
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 5.2e-25 117.9 83 68.7
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 5.2e-25 117.9 83 66.3
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 6.7e-25 117.5 113 58.4
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 8.8e-25 117.1 83 66.3
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 8.8e-25 117.1 105 59.0
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.1e-24 116.7 101 60.4
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.1e-24 116.7 109 56.9
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 2.0e-24 115.9 86 61.6
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.6e-24 115.5 83 69.9
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 3.3e-24 115.2 83 66.3
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 3.3e-24 115.2 97 61.9
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 4.4e-24 114.8 105 58.1
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.7e-24 114.4 74 77.0
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.7e-24 114.4 83 65.1
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 7.4e-24 114.0 83 65.1
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 7.4e-24 114.0 83 69.9
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 7.4e-24 114.0 83 63.9
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 9.7e-24 113.6 83 62.7
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.3e-23 113.2 66 87.9
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.7e-23 112.8 83 63.9
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 2.8e-23 112.1 69 78.3
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.8e-23 112.1 74 75.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.8e-23 112.1 105 56.2
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 3.7e-23 111.7 141 47.5
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.8e-23 111.3 69 76.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 6.3e-23 110.9 69 76.8
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 6.3e-23 110.9 69 76.8
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 6.3e-23 110.9 94 61.7
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.1e-22 110.2 83 65.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-22 109.8 69 75.4
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.4e-22 109.8 69 75.4
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.4e-22 109.8 108 59.3
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.4e-22 109.8 83 67.5
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 3.1e-22 108.6 85 65.9
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 7.0e-22 107.5 86 59.3
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 7.0e-22 107.5 65 78.5
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 9.1e-22 107.1 84 64.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 9.1e-22 107.1 84 64.3
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 9.1e-22 107.1 89 60.7
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.2e-21 106.7 83 62.7
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 2.6e-21 105.5 96 56.2
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 3.5e-21 105.1 82 67.1
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 7.7e-21 104.0 74 67.6
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 8.5e-20 100.5 105 53.3
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.9e-19 99.4 85 62.4
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.2e-18 96.7 98 49.0
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.2e-18 96.7 98 49.0
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 6.1e-18 94.4 64 70.3
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 8.0e-18 94.0 85 56.5
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.7e-17 90.9 80 60.0
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 6.7e-17 90.9 77 66.2
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.2e-16 90.1 80 58.8
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 4.4e-16 88.2 78 53.8
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 5.7e-16 87.8 54 79.6
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.1e-14 82.0 80 51.2
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.5e-13 78.6 75 58.7
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.3e-12 76.6 103 39.8
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.3e-12 76.6 61 60.7
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.5e-11 72.4 57 57.9
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.2e-11 71.6 68 57.4
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.2e-10 70.1 46 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.1e-10 69.3 53 62.3
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 4.7e-10 68.2 53 62.3
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 2.2e-07 59.3 58 51.7
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 4.8e-07 58.2 77 40.3
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 6.3e-07 57.8 31 77.4
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-06 56.6 39 71.8


User provided reference genes

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