Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.8e-142 507.3 251 100.0
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.8e-102 376.3 237 77.2
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.7e-100 369.8 238 75.2
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 7.9e-82 307.8 238 66.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.4e-78 296.2 194 74.7
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-77 293.9 253 58.9
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.8e-77 291.6 253 58.5
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 4.2e-75 285.4 178 75.8
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.1e-74 283.1 240 58.8
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.3e-73 279.6 240 57.5
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 3.9e-73 278.9 241 58.1
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 7.4e-64 248.1 241 53.5
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.2e-63 246.5 239 53.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.8e-62 243.4 240 53.3
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.9e-62 241.5 242 53.3
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.4e-61 239.2 242 51.7
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 3.4e-61 239.2 241 51.5
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.3e-60 237.3 240 51.2
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.2e-60 236.5 240 51.7
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.8e-60 235.7 240 52.5
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 7.2e-59 231.5 230 53.5
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 4.6e-58 228.8 241 49.8
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 6.1e-58 228.4 238 48.3
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.3e-57 226.5 237 48.9
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 5.1e-57 225.3 243 47.7
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.1e-57 225.3 240 48.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 6.7e-57 224.9 238 47.9
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 6.7e-57 224.9 236 47.9
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 8.8e-57 224.6 232 49.6
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.1e-56 224.2 231 49.4
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 3.3e-56 222.6 227 48.0
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 5.7e-56 221.9 235 51.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 7.4e-56 221.5 235 48.1
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 2.2e-55 219.9 238 47.1
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.2e-55 219.9 230 48.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.8e-55 219.5 237 49.4
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.8e-55 218.8 232 48.3
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.8e-55 218.8 230 48.3
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 6.3e-55 218.4 240 45.4
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.1e-54 217.6 239 46.4
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.8e-54 216.9 239 46.4
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.1e-54 216.1 240 45.4
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.1e-54 215.7 231 46.8
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.1e-54 215.7 231 46.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.3e-54 215.3 244 44.3
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.3e-54 215.3 238 44.5
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 6.9e-54 214.9 244 43.9
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 6.9e-54 214.9 200 51.0
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 9.1e-54 214.5 227 45.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.2e-53 214.2 237 46.8
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.5e-53 213.8 240 49.2
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.5e-53 213.8 231 45.9
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.4e-53 212.6 231 45.5
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.9e-53 211.8 250 42.8
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.9e-53 211.8 250 42.8
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 7.7e-53 211.5 240 44.2
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.7e-53 211.5 238 45.4
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.0e-52 211.1 231 45.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-52 210.3 231 45.5
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-52 209.5 241 46.1
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.9e-52 209.5 236 44.1
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 5.0e-52 208.8 236 44.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.5e-52 208.4 238 47.9
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.5e-52 208.0 238 44.5
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.5e-52 208.0 239 43.9
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.1e-51 207.6 235 46.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.1e-51 207.6 236 43.6
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-51 205.7 238 43.7
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-51 205.7 238 43.7
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 4.2e-51 205.7 235 44.3
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 5.5e-51 205.3 238 43.7
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 7.2e-51 204.9 244 41.8
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 7.2e-51 204.9 231 43.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.7e-50 203.0 234 44.9
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 4.7e-50 202.2 230 43.9
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 6.1e-50 201.8 226 43.8
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.0e-49 201.1 232 44.8
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.4e-49 200.7 228 42.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.3e-49 199.9 241 42.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 3.0e-49 199.5 223 44.8
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.9e-49 199.1 241 44.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-48 197.6 239 45.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 9.7e-48 194.5 232 42.7
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.7e-47 193.7 218 44.5
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.7e-47 193.7 210 50.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 3.7e-47 192.6 227 42.7
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 3.7e-47 192.6 242 45.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 8.2e-47 191.4 200 47.0
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.4e-46 190.7 241 43.6
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 2.4e-46 189.9 216 45.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 3.1e-46 189.5 237 46.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 9.1e-46 188.0 233 42.5
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 2.6e-45 186.4 245 38.8
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.7e-45 184.9 225 42.7
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.3e-44 184.1 231 40.7
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.0e-44 182.2 238 40.8
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 6.5e-44 181.8 230 39.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 8.5e-44 181.4 240 40.4
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 8.5e-44 181.4 218 44.5
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.5e-43 179.9 234 42.3
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 5.5e-43 178.7 238 40.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 7.2e-43 178.3 238 40.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 9.4e-43 177.9 230 38.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 9.4e-43 177.9 230 38.3
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.2e-42 177.6 240 39.6
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 2.7e-42 176.4 234 40.6
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.6e-42 176.0 225 42.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 4.7e-42 175.6 232 38.4
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 6.1e-42 175.3 232 38.4
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 6.1e-42 175.3 232 38.4
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 6.1e-42 175.3 211 44.1
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.0e-42 174.9 211 43.6
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.0e-41 174.5 224 41.1
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.0e-41 174.5 241 36.9
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.0e-41 172.9 213 44.1
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 8.8e-41 171.4 215 40.9
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.6e-40 169.9 229 41.9
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 4.4e-40 169.1 231 39.4
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.7e-40 168.7 230 38.7
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.8e-39 166.4 229 39.7
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 3.7e-39 166.0 215 40.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 3.7e-39 166.0 234 37.6
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 4.8e-39 165.6 198 42.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.8e-39 165.6 231 41.1
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 4.1e-38 162.5 217 38.7
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.0e-37 160.2 197 42.1
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.0e-36 157.9 235 40.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.2e-36 156.8 225 39.6
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.5e-36 155.2 251 38.2
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 6.5e-36 155.2 231 35.5
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.5e-35 154.1 227 38.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.5e-35 154.1 147 49.0
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 3.6e-34 149.4 226 37.6
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.6e-34 149.4 154 46.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 3.6e-34 149.4 225 34.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 4.7e-34 149.1 224 37.1
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 8.0e-34 148.3 230 36.5
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.0e-33 147.9 169 42.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.0e-33 147.9 168 47.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.4e-33 147.5 152 46.7
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.8e-33 147.1 218 35.8
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 4.0e-33 146.0 158 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 5.2e-33 145.6 229 35.8
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.2e-32 144.4 222 36.9
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.6e-32 143.3 155 46.5
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 7.5e-32 141.7 231 36.8
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 7.5e-32 141.7 231 36.8
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.2e-31 140.2 218 34.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 3.7e-31 139.4 217 35.0
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 8.3e-31 138.3 165 41.2
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.1e-30 136.0 218 39.0
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-26 124.4 139 43.9
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-26 124.0 175 42.9
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.0e-25 119.8 145 41.4
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.2e-24 117.9 217 31.8
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.3e-23 114.4 236 30.1
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.7e-23 114.0 121 46.3
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 4.9e-23 112.5 114 51.8
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 6.3e-23 112.1 118 45.8
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 4.1e-22 109.4 196 31.6
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-20 104.8 152 41.4
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.3e-20 104.4 134 46.3
Medtr7g109760 Medicago truncatula HOM05D003762 ORTHO05D004374 1.3e-20 104.4 166 42.8
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-17 94.4 108 42.6
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 5.2e-17 92.4 105 44.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 8.3e-15 85.1 80 48.8
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.4e-14 82.4 136 38.2
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.2e-13 81.3 92 42.4
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-13 81.3 215 30.2
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 3.5e-13 79.7 91 44.0
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.0e-12 78.2 91 45.1
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.3e-12 77.0 88 44.3
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 7.3e-11 72.0 78 42.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 7.3e-11 72.0 80 43.8
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.6e-10 70.9 100 41.0
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-10 70.9 100 35.0
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 6.8e-09 65.5 164 29.3
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 3.7e-07 59.7 67 43.3


User provided reference genes

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