Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 0.0e+00 1430.2 724 100.0
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 0.0e+00 1115.9 638 88.4
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 4.6e-292 1007.7 640 80.3
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 5.3e-288 994.2 642 78.7
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.3e-286 989.6 643 79.3
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 3.3e-282 974.9 649 76.9
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 6.3e-233 811.2 645 62.6
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 6.3e-225 784.6 644 62.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 7.5e-218 761.1 420 88.3
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 2.8e-217 759.2 644 60.6
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 7.0e-208 728.0 649 56.7
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 6.2e-204 714.9 714 53.8
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 1.4e-203 713.8 478 75.9
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 1.2e-202 710.7 650 56.6
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 7.8e-199 698.0 648 55.7
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 7.8e-199 698.0 646 56.5
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 6.6e-198 694.9 714 52.5
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 9.5e-197 691.0 646 55.4
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 1.6e-196 690.3 641 56.3
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.7e-196 688.7 646 55.3
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 8.1e-196 688.0 646 55.4
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.1e-195 687.6 641 56.2
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 1.5e-194 683.7 712 52.8
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 2.6e-194 682.9 641 55.9
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.7e-193 680.2 639 56.0
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 8.3e-193 677.9 641 55.4
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 7.1e-192 674.9 646 55.7
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 4.6e-191 672.2 640 53.9
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.0e-190 671.0 646 55.6
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.9e-190 669.1 651 55.0
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.6e-188 663.7 664 53.5
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 6.2e-188 661.8 643 52.7
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 8.1e-188 661.4 644 53.0
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 3.1e-187 659.4 643 54.4
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 2.1e-183 646.7 612 55.9
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 4.6e-183 645.6 645 51.3
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 2.5e-181 639.8 646 50.9
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.2e-175 620.9 642 51.7
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 2.7e-175 619.8 655 51.3
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 3.0e-174 616.3 680 47.6
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 6.6e-174 615.1 643 51.2
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 6.6e-174 615.1 646 50.2
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 8.7e-174 614.8 655 51.1
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 4.3e-173 612.5 654 50.8
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.6e-172 610.5 645 49.3
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.6e-172 610.5 750 46.3
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 3.4e-170 602.8 640 51.1
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.3e-169 600.9 709 46.7
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 3.5e-167 592.8 645 48.4
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 3.9e-166 589.3 430 72.6
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 5.1e-166 589.0 643 48.1
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 5.1e-166 589.0 641 49.6
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 2.5e-165 586.6 650 49.2
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 3.3e-165 586.3 737 45.6
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 2.8e-164 583.2 645 46.8
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 3.7e-164 582.8 738 45.1
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 4.8e-164 582.4 580 51.9
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 6.2e-164 582.0 643 47.6
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 6.2e-164 582.0 615 50.7
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 5.3e-163 578.9 783 43.6
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 6.9e-163 578.6 640 47.5
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 2.0e-162 577.0 694 45.4
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 2.6e-162 576.6 597 52.4
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 4.5e-162 575.9 667 48.3
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 1.9e-160 570.5 643 48.7
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 4.2e-160 569.3 684 45.8
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.5e-160 568.9 661 45.5
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 7.1e-160 568.5 643 47.9
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.1e-155 554.7 653 46.9
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.1e-152 544.7 674 44.7
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 1.2e-151 541.2 642 46.1
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.6e-151 539.3 651 46.4
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 4.3e-149 532.7 618 46.4
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 9.7e-149 531.6 616 45.9
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 2.8e-148 530.0 614 46.4
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 2.8e-148 530.0 659 45.1
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 3.7e-148 529.6 617 44.7
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.4e-147 527.7 639 44.6
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 5.3e-147 525.8 639 45.5
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.1e-139 501.5 374 69.8
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 4.5e-138 496.1 645 42.3
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 2.9e-137 493.4 513 50.3
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 4.2e-136 489.6 650 42.0
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 5.0e-121 439.5 590 40.8
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.0e-110 405.2 468 49.1
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 5.2e-110 402.9 390 52.8
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 6.8e-110 402.5 451 47.5
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.0e-109 401.0 585 40.9
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.6e-109 400.6 251 78.5
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 2.4e-107 394.0 461 48.6
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 5.9e-106 389.4 644 37.4
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.3e-102 377.5 352 54.5
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 9.8e-93 345.5 273 59.3
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 2.4e-91 340.9 357 49.0
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.5e-88 331.6 297 55.2
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 5.6e-88 329.7 465 41.5
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 8.9e-86 322.4 674 32.8
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.5e-85 321.6 335 50.4
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 2.6e-85 320.9 615 38.5
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 9.8e-85 318.9 349 48.1
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 9.2e-83 312.4 287 56.4
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 8.6e-81 305.8 729 30.0
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 9.5e-80 302.4 301 51.5
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 3.4e-77 293.9 643 36.7
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.9e-76 290.8 287 53.0
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 3.9e-73 280.4 674 28.3
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.9e-72 278.1 445 38.2
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.0e-69 268.1 793 27.5
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.0e-65 254.2 163 77.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.3e-63 248.8 196 62.8
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 3.6e-55 220.7 245 51.4
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 5.8e-53 213.4 160 62.5
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 1.9e-51 208.4 275 44.4
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.1e-50 204.9 270 46.3
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 6.0e-50 203.4 160 61.2
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.9e-48 198.4 158 57.0
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 9.6e-48 196.1 871 22.4
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 8.1e-47 193.0 158 56.3
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.5e-45 188.7 145 64.1
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 5.1e-25 120.6 95 56.8
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.8e-22 112.1 98 59.2
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 4.1e-22 110.9 151 46.4
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 3.8e-20 104.4 162 38.9
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.4e-14 85.1 594 20.2
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 1.3e-12 79.3 59 72.9
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 3.2e-11 74.7 170 31.8
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.8e-09 68.9 162 32.7
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.5e-08 65.9 35 77.1
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 4.4e-08 64.3 211 26.5


User provided reference genes

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