Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 2543.8 1330 100.0
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 2287.7 1330 90.1
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 2274.2 1321 90.3
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 2258.8 1330 89.1
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 2154.8 1336 84.4
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 2045.4 1346 81.9
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 2026.1 1343 80.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1993.4 1341 79.5
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1964.5 1357 77.7
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1862.0 1335 73.0
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1860.5 1329 74.3
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1855.1 1334 73.8
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1847.8 1350 73.6
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1846.2 1348 72.3
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1843.9 1349 72.8
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1841.2 1350 73.3
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1839.3 1367 71.6
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1837.4 1375 71.1
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1836.6 1352 72.5
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1834.7 1327 73.4
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1828.5 1352 72.3
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1827.0 1352 72.4
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1825.4 1350 71.6
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1825.4 1347 72.3
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1819.7 1346 71.2
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1810.0 1350 71.6
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1805.4 1354 71.0
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1804.6 1315 72.3
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1798.9 1352 71.0
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1784.6 1350 69.9
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1783.5 1327 71.4
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1773.4 1373 68.0
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1771.9 1345 69.9
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1768.4 1327 71.1
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1766.5 1352 69.7
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1765.7 1360 70.1
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1765.7 1348 70.0
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1763.0 1347 69.9
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1758.0 1340 69.7
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1758.0 1346 69.2
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1749.9 1361 68.1
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1748.0 1309 70.5
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1744.6 1363 69.6
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1744.2 1322 70.2
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1743.8 1332 70.2
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1740.7 1352 68.1
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1738.0 1264 72.1
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1735.3 1276 71.4
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1734.5 1340 69.5
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1729.5 1363 68.0
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1722.6 1346 68.1
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1719.5 1354 68.1
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1718.7 1361 68.0
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1716.4 1392 67.2
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1714.1 1329 69.4
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1713.0 1268 70.4
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1709.5 1273 70.1
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1706.8 1283 69.1
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1701.8 1368 67.3
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1701.4 1271 69.7
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1701.4 1271 69.7
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1697.6 1275 69.3
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1696.0 1354 68.0
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1695.6 1278 69.2
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1695.2 1288 68.9
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1694.1 1273 69.5
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1694.1 1273 69.4
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1693.7 1274 69.5
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1692.6 1273 69.4
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1692.6 1273 69.4
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1692.2 1274 69.2
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1684.1 1364 68.3
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1677.1 1350 66.3
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1672.1 1265 68.4
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1671.8 1331 67.9
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1668.7 1265 68.1
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1664.4 1171 75.0
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1657.5 1349 67.2
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1657.1 1262 68.6
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1647.1 1490 61.7
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1644.0 1348 64.8
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1635.5 1354 66.1
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1626.3 1380 65.1
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1624.8 1278 68.3
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1619.0 1338 66.4
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1600.1 1327 65.2
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1598.2 1354 63.4
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1588.5 1393 63.0
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1585.5 1265 66.7
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1567.0 1135 73.8
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1546.2 1331 61.9
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1531.2 1342 60.9
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1526.5 1118 70.7
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1517.7 1189 68.5
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1515.7 1134 71.1
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1482.6 1285 63.6
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1473.8 1212 66.1
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1438.7 1369 56.4
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1418.3 1199 63.2
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1349.0 1116 65.5
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1324.3 1354 55.0
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1226.5 1068 63.3
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1173.7 832 73.6
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1143.6 1347 46.5
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 0.0e+00 1083.6 1279 46.8
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1078.5 1269 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 2.6e-309 1065.8 1389 44.8
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 8.4e-300 1034.2 781 70.7
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 2.4e-294 1016.1 1290 43.6
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 2.7e-253 879.8 1253 41.6
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.1e-243 847.8 803 60.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 7.4e-179 632.5 1162 33.4
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 8.5e-175 619.0 1310 33.0
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 9.3e-174 615.5 649 54.2
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 7.7e-160 569.3 553 60.4
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 3.3e-118 431.0 361 63.7
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 6.8e-108 396.7 349 63.6
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 6.4e-90 337.0 1089 25.9
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 1.3e-87 329.3 1098 25.5
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 1.1e-65 256.5 1364 23.8
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.1e-62 246.5 259 56.0
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.1e-62 246.5 259 56.0
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 1.6e-61 242.7 183 72.7
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.7e-53 214.9 257 51.8
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.6e-51 208.8 207 54.6
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.8e-50 204.9 184 63.6
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-49 203.4 174 66.1
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 9.4e-49 200.3 215 52.6
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.7e-48 198.0 215 51.2
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 5.3e-44 184.5 162 58.6
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 2.0e-43 182.6 223 41.3
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.5e-43 181.8 178 54.5
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.7e-39 167.5 146 64.4
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 4.4e-38 164.9 141 59.6
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.0e-34 153.7 92 84.8
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 4.0e-31 141.7 122 59.8
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 9.7e-30 137.1 97 75.3
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.0e-26 124.8 109 65.1
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-25 123.2 107 66.4
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.1e-24 119.4 140 53.6
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.7e-24 119.0 77 80.5
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.7e-24 119.0 77 80.5
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 5.2e-23 114.8 145 52.4
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.6e-22 112.5 71 81.7
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.5e-22 110.9 107 54.2
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 4.5e-19 101.7 63 84.1
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 5.0e-18 98.2 61 80.3
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.6e-18 97.4 69 71.0
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 5.5e-17 94.7 101 52.5
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 9.5e-17 94.0 116 46.6
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-16 93.2 65 73.8
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 2.6e-14 85.9 92 53.3
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 2.7e-11 75.9 65 61.5
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 2.3e-10 72.8 63 58.7
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 1.2e-08 67.0 63 55.6
TPR.G29585 Trifolium pratense HOM05D004602 ORTHO05D005906 3.6e-08 65.5 36 97.2
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 1.8e-07 63.2 89 47.2
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 8.9e-07 60.8 57 56.1
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 2.6e-06 59.3 137 27.7
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 2.6e-06 59.3 137 27.0
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 2.6e-06 59.3 137 27.0
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 3.4e-06 58.9 137 27.0
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 3.4e-06 58.9 137 27.0
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 3.4e-06 58.9 137 27.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 3.4e-06 58.9 137 27.0
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 3.4e-06 58.9 137 27.0
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 3.4e-06 58.9 161 26.7
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 5.8e-06 58.2 137 27.0
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 5.8e-06 58.2 137 27.0
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 5.8e-06 58.2 137 27.0
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 5.8e-06 58.2 137 26.3
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 7.5e-06 57.8 137 27.0
Haze_19711 Corylus avellana HOM05D055146 ORTHO05D044793 7.5e-06 57.8 94 50.0
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 7.5e-06 57.8 137 26.3
GSVIVG01034310001 Vitis vinifera HOM05D013764 ORTHO05D014120 9.8e-06 57.4 71 53.5


User provided reference genes

Program Settings