Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 0.0e+00 1921.0 971 100.0
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 0.0e+00 1624.0 983 84.4
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 0.0e+00 1575.5 988 82.5
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 0.0e+00 1444.1 981 75.5
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 0.0e+00 1397.1 983 72.7
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 0.0e+00 1373.2 981 71.8
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 0.0e+00 1334.3 982 70.2
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 0.0e+00 1308.1 999 67.7
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 0.0e+00 1293.5 1005 66.9
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 0.0e+00 1175.2 801 76.9
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 0.0e+00 1100.5 980 58.9
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 0.0e+00 1099.0 972 58.2
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 8.0e-311 1070.5 972 59.3
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 1.7e-302 1042.7 1011 55.8
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 2.3e-302 1042.3 975 57.3
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 2.3e-299 1032.3 977 54.7
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 1.7e-297 1026.2 977 55.9
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 4.0e-291 1005.0 974 55.9
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 4.4e-290 1001.5 981 53.8
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.0e-286 990.3 972 54.8
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 9.2e-280 967.2 919 55.7
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 5.1e-270 934.9 1044 50.4
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 8.7e-270 934.1 985 51.7
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 3.4e-266 922.2 673 72.2
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 7.9e-263 911.0 852 56.7
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 2.4e-259 899.4 966 48.9
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 5.3e-259 898.3 1018 51.1
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 6.0e-255 884.8 997 50.7
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 5.6e-253 878.2 951 49.5
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 7.6e-250 867.8 975 49.1
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 7.1e-248 861.3 973 49.7
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 2.1e-247 859.8 916 50.5
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 3.0e-246 855.9 914 50.3
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 5.1e-246 855.1 962 48.6
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 1.5e-245 853.6 944 47.4
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 3.3e-245 852.4 948 47.8
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 2.4e-243 846.3 981 49.3
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 1.1e-240 837.4 971 47.6
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 2.7e-239 832.8 945 47.2
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 1.0e-238 830.9 970 46.4
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 3.0e-238 829.3 917 48.2
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 2.2e-236 823.2 915 48.1
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 2.6e-234 816.2 1004 45.1
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 1.1e-232 810.8 954 46.9
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 1.6e-231 807.0 869 49.8
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 2.1e-231 806.6 764 57.6
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.0e-229 800.0 1052 43.7
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 8.2e-228 794.7 899 47.9
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 2.3e-222 776.5 923 46.7
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 1.3e-220 770.8 980 45.2
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 2.2e-220 770.0 1012 44.0
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 3.1e-219 766.1 965 45.2
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 3.8e-217 759.2 894 46.8
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 2.6e-213 746.5 855 48.7
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.8e-211 740.3 959 46.4
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 4.5e-210 735.7 656 59.5
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 6.5e-209 731.9 974 44.8
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 3.0e-206 723.0 797 49.1
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 4.8e-204 715.7 756 52.0
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 3.3e-200 703.0 802 47.6
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 2.9e-188 663.3 759 48.4
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 5.0e-185 652.5 900 42.6
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 1.5e-184 651.0 836 46.1
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 3.5e-178 629.8 945 40.5
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.2e-175 621.3 843 42.9
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 2.8e-175 620.2 668 51.0
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 1.0e-169 601.7 485 63.7
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 3.8e-164 583.2 655 49.3
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 5.1e-161 572.8 826 42.4
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 1.8e-158 564.3 863 41.0
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 1.9e-155 554.3 865 39.7
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 3.2e-147 526.9 527 55.8
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 7.4e-136 489.2 478 55.9
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 2.2e-132 477.6 424 60.4
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 3.5e-130 470.3 494 51.0
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 3.9e-129 466.8 793 38.3
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 7.2e-115 419.5 340 62.6
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 9.4e-107 392.5 617 39.9
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 2.6e-101 374.4 398 49.0
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 5.9e-101 373.2 540 41.1
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.0e-100 370.2 290 63.1
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 3.4e-96 357.5 817 33.8
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 6.3e-95 353.2 992 29.9
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 3.2e-91 340.9 252 68.7
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 9.1e-86 322.8 418 40.0
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 3.6e-74 284.3 245 59.6
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 2.0e-72 278.5 950 26.4
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.1e-70 272.7 508 36.2
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 2.9e-63 248.1 884 27.3
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.5e-59 235.7 173 69.9
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 1.9e-59 235.3 748 30.3
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 5.6e-59 233.8 198 61.6
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 9.5e-59 233.0 236 58.1
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 8.3e-55 219.9 324 42.0
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 2.7e-53 214.9 172 61.0
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 8.1e-50 203.4 182 56.0
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 9.9e-48 196.4 202 49.0
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 1.6e-42 179.1 221 45.2
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.1e-33 149.8 124 60.5
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 2.4e-33 148.7 166 43.4
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 4.0e-33 147.9 129 57.4
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 5.4e-30 137.5 138 52.2
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 4.6e-29 134.4 159 50.3
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 5.1e-28 131.0 105 55.2
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.3e-27 128.3 172 44.2
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 2.1e-26 125.6 98 64.3
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 6.2e-26 124.0 295 33.9
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.5e-24 119.4 96 59.4
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 5.8e-24 117.5 221 31.7
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 2.3e-20 105.5 76 63.2
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.1e-17 96.7 90 56.7
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 9.0e-17 93.6 103 48.5
Lj1g0014420 Lotus japonicus HOM05D006439 ORTHO05D046803 2.6e-16 92.0 81 63.0
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 8.4e-15 87.0 131 35.1
Glyma.19G193000 Glycine max HOM05D006439 ORTHO05D046803 1.4e-14 86.3 78 64.1
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 5.5e-14 84.3 85 47.1
Psat6g076200 Pisum sativum HOM05D006439 ORTHO05D008152 2.5e-11 75.5 52 69.2
Lj1g0023385 Lotus japonicus HOM05D006439 ORTHO05D008152 8.2e-10 70.5 76 52.6
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.8e-09 69.3 65 49.2
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.8e-09 69.3 81 43.2
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.3e-09 67.8 69 53.6
Lalb_Chr05g0213421 Lupinus albus HOM05D001905 ORTHO05D001820 1.5e-08 66.2 401 23.4
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 5.9e-08 64.3 235 26.8
AUR62016323 Chenopodium quinoa HOM05D001219 ORTHO05D001017 1.7e-07 62.8 447 23.7
Sabra03G0131300 Salix brachista HOM05D001219 ORTHO05D001017 6.5e-07 60.8 362 21.8
Glyma.01G189600 Glycine max HOM05D001905 ORTHO05D001820 8.5e-07 60.5 399 23.8
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 8.5e-07 60.5 404 21.0
TWI60G1191 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 1.9e-06 59.3 388 24.5
Glyma.17G167800 Glycine max HOM05D001905 ORTHO05D001820 2.5e-06 58.9 369 24.1
PGSC0003DMG400020918 Solanum tuberosum HOM05D001905 ORTHO05D001820 3.2e-06 58.5 353 23.8
VMungo1215G2184 Vigna mungo HOM05D001905 ORTHO05D001820 3.2e-06 58.5 397 23.4
FAN15G1989 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.2e-06 58.2 191 30.4
QL11p043997 Quercus lobata HOM05D006439 ORTHO05D008152 5.5e-06 57.8 58 55.2
TPR.G29730 Trifolium pratense HOM05D001219 ORTHO05D001017 5.5e-06 57.8 422 21.8
Lalb_Chr01g0012921 Lupinus albus HOM05D001219 ORTHO05D001017 7.2e-06 57.4 424 21.0
Potri.005G141800 Populus trichocarpa HOM05D001905 ORTHO05D001820 7.2e-06 57.4 441 21.3


User provided reference genes

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