Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 1.1e-254 882.9 453 100.0
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 4.7e-234 814.3 512 83.4
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 4.0e-233 811.2 526 81.7
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 4.5e-221 771.2 512 78.3
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.2e-218 763.1 514 77.4
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 3.1e-214 748.4 523 75.1
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 4.1e-214 748.0 512 76.4
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 9.2e-214 746.9 527 74.0
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 1.2e-210 736.5 557 70.2
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 6.8e-209 730.7 507 75.3
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 2.3e-204 715.7 502 75.3
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 3.0e-204 715.3 508 72.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 2.2e-199 699.1 514 70.4
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.3e-196 689.9 513 70.2
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 1.7e-196 689.5 514 70.8
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 3.9e-196 688.3 515 70.1
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 6.6e-196 687.6 519 70.3
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.1e-195 686.8 528 68.6
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 5.6e-195 684.5 516 69.8
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 5.6e-195 684.5 514 70.2
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.8e-194 682.2 514 70.0
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.8e-194 682.2 527 69.1
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 2.8e-194 682.2 527 69.6
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 3.6e-194 681.8 516 69.8
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 8.1e-194 680.6 527 68.9
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.1e-193 680.2 514 70.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.1e-193 680.2 512 69.5
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 2.3e-193 679.1 513 69.2
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 4.0e-193 678.3 508 69.7
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.5e-192 676.4 527 68.9
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 2.0e-192 676.0 512 68.4
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 2.6e-192 675.6 516 68.6
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.3e-191 673.3 514 69.3
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 4.9e-191 671.4 528 68.0
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 6.4e-191 671.0 514 69.1
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.4e-190 669.8 530 68.7
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.1e-189 666.0 514 67.7
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 4.6e-189 664.8 514 68.5
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 6.0e-189 664.5 523 66.5
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.3e-188 663.3 504 69.4
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 6.2e-186 654.4 515 66.4
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 3.1e-185 652.1 560 63.2
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.2e-184 650.2 522 65.5
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.5e-184 649.8 494 68.6
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 5.8e-184 647.9 526 65.6
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 1.7e-183 646.4 511 65.2
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 2.2e-183 646.0 509 66.4
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 6.4e-183 644.4 529 64.5
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.9e-182 642.9 493 67.1
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 4.1e-182 641.7 515 64.9
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 4.1e-182 641.7 515 64.7
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 5.4e-182 641.3 511 66.3
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.2e-181 640.2 511 66.1
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 4.6e-181 638.3 529 64.7
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 8.7e-180 634.0 515 63.5
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 7.3e-179 630.9 528 63.8
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.6e-178 629.8 509 63.9
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 8.1e-178 627.5 508 64.4
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.1e-177 627.1 509 63.3
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 4.0e-177 625.2 512 64.3
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 2.0e-176 622.9 514 63.4
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 9.9e-176 620.5 457 70.2
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 6.4e-175 617.8 503 63.6
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 1.9e-174 616.3 501 63.1
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.2e-174 615.5 501 63.5
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.2e-174 615.1 503 63.8
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 5.4e-174 614.8 503 63.2
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 5.4e-174 614.8 515 62.1
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.6e-173 613.2 503 63.0
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 2.3e-172 609.4 533 61.0
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.9e-172 608.6 503 63.0
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.9e-172 608.6 503 62.8
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 4.3e-171 605.1 520 61.3
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.6e-171 604.7 495 64.0
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.3e-170 603.6 503 63.0
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 6.2e-170 601.3 504 62.1
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 1.8e-169 599.7 523 60.6
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.1e-169 599.0 507 62.1
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 6.9e-169 597.8 486 66.0
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.5e-168 596.7 493 63.7
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.4e-168 595.5 520 60.8
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 5.8e-168 594.7 520 60.4
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.1e-166 590.5 508 60.8
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 7.1e-166 587.8 507 60.6
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 6.0e-165 584.7 525 59.6
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 1.0e-164 583.9 538 58.2
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 3.0e-164 582.4 509 62.5
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 5.6e-163 578.2 505 62.4
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 2.1e-162 576.2 514 61.7
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.7e-162 575.5 514 60.5
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 3.7e-162 575.5 493 60.4
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 4.8e-162 575.1 514 61.3
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 6.2e-162 574.7 509 61.9
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 1.8e-161 573.2 503 59.4
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.8e-161 573.2 548 58.2
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.0e-161 572.0 502 61.8
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 5.3e-161 571.6 509 61.7
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 5.3e-161 571.6 523 58.5
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 3.9e-156 555.4 499 60.1
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.5e-155 553.5 493 58.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 1.6e-154 550.1 517 57.1
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 9.0e-153 544.3 431 67.5
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.5e-152 543.5 524 56.5
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 2.2e-146 523.1 514 57.8
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 1.4e-145 520.4 509 56.6
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.2e-144 517.3 438 63.2
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.4e-142 510.4 484 57.4
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 5.5e-142 508.4 421 63.4
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 2.5e-139 499.6 425 62.6
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 6.1e-117 425.2 355 65.9
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 3.7e-114 416.0 402 58.2
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.8e-113 413.7 527 45.0
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 7.7e-112 408.3 387 57.1
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 8.0e-109 398.3 516 44.4
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.7e-106 390.6 493 43.4
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 1.2e-93 347.8 388 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 2.9e-90 336.7 470 41.3
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 7.5e-75 285.4 461 41.4
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 4.2e-57 226.5 139 80.6
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 1.1e-46 191.8 475 33.7
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.9e-41 174.5 123 68.3
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.9e-33 147.9 137 59.9
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.4e-25 121.7 79 73.4
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 3.9e-23 113.6 76 71.1
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 8.8e-23 112.5 72 73.6
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.1e-22 112.1 72 79.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-21 107.5 143 37.8
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 4.8e-21 106.7 104 57.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-20 105.5 127 48.8
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 9.1e-20 102.4 65 73.8
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 6.1e-16 89.7 253 29.2
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-10 69.3 52 53.8
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 9.4e-09 65.9 74 52.7
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 5.2e-07 60.1 46 60.9
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 5.7e-06 56.6 137 30.7


User provided reference genes

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