Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 9.1e-66 253.4 130 100.0
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 2.8e-51 205.3 129 80.6
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 2.9e-43 178.7 129 73.6
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 3.6e-38 161.8 126 67.5
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 1.2e-36 156.8 108 75.0
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.5e-36 156.4 124 65.3
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 5.6e-31 137.9 127 59.8
TPR.G19124 Trifolium pratense HOM05D000651 ORTHO05D003990 9.5e-31 137.1 71 100.0
TPR.G32483 Trifolium pratense HOM05D000651 ORTHO05D003990 9.9e-28 127.1 67 94.0
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 1.9e-26 122.9 120 57.5
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 7.8e-25 117.5 126 54.8
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 8.9e-21 104.0 125 48.8
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 8.9e-21 104.0 110 53.6
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 8.9e-21 104.0 120 48.3
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 1.2e-20 103.6 120 48.3
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 1.5e-20 103.2 125 48.0
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 2.0e-20 102.8 125 50.4
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 3.4e-20 102.1 122 48.4
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 4.4e-20 101.7 128 46.1
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 4.4e-20 101.7 122 48.4
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 2.2e-19 99.4 121 47.9
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 2.9e-19 99.0 125 46.4
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 7.1e-18 94.4 129 41.9
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 1.2e-17 93.6 129 41.9
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 2.7e-17 92.4 125 44.0
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 7.8e-17 90.9 114 44.7
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 2.3e-16 89.4 125 45.6
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 1.9e-15 86.3 131 41.2
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 3.3e-15 85.5 113 43.4
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 4.3e-15 85.1 124 40.3
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 4.3e-15 85.1 124 40.3
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 4.3e-15 85.1 124 41.1
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 9.6e-15 84.0 124 40.3
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 1.3e-14 83.6 126 40.5
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 1.6e-14 83.2 121 42.1
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 3.6e-14 82.0 98 44.9
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 3.6e-14 82.0 108 45.4
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 3.6e-14 82.0 123 43.1
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 6.2e-14 81.3 115 41.7
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 1.4e-13 80.1 130 40.0
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 1.4e-13 80.1 118 40.7
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 1.4e-13 80.1 111 40.5
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 1.4e-13 80.1 122 40.2
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 1.4e-13 80.1 114 35.1
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 3.1e-13 79.0 132 38.6
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 4.0e-13 78.6 101 42.6
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 4.0e-13 78.6 107 43.9
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 4.0e-13 78.6 107 43.9
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 6.9e-13 77.8 93 43.0
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 9.0e-13 77.4 108 43.5
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.2e-12 77.0 117 39.3
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 1.2e-12 77.0 101 41.6
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 1.5e-12 76.6 101 41.6
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 1.5e-12 76.6 103 40.8
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 2.0e-12 76.3 107 43.0
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 2.6e-12 75.9 83 44.6
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 2.6e-12 75.9 111 36.9
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 2.6e-12 75.9 108 38.9
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 2.6e-12 75.9 116 34.5
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.4e-12 75.5 78 48.7
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 4.4e-12 75.1 112 39.3
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 5.8e-12 74.7 75 52.0
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 5.8e-12 74.7 85 48.2
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 7.6e-12 74.3 117 36.8
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 7.6e-12 74.3 118 39.8
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 9.9e-12 73.9 78 47.4
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 9.9e-12 73.9 78 47.4
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 9.9e-12 73.9 116 37.9
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.7e-11 73.2 126 32.5
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 2.2e-11 72.8 110 39.1
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.2e-11 72.8 126 38.9
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 2.9e-11 72.4 78 47.4
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 2.9e-11 72.4 107 39.3
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 2.9e-11 72.4 119 37.0
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 2.9e-11 72.4 112 38.4
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.9e-11 72.4 84 40.5
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 2.9e-11 72.4 94 41.5
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 3.8e-11 72.0 116 35.3
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.9e-11 71.6 125 37.6
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.9e-11 71.6 125 37.6
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 4.9e-11 71.6 122 36.1
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 4.9e-11 71.6 78 44.9
arahy.Tifrunner.gnm1.ann1.FQ9DWZ Arachis hypogaea HOM05D000651 ORTHO05D003990 6.4e-11 71.2 76 52.6
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 6.4e-11 71.2 101 40.6
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 6.4e-11 71.2 88 43.2
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 6.4e-11 71.2 83 45.8
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 6.4e-11 71.2 114 38.6
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 8.4e-11 70.9 99 41.4
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 1.4e-10 70.1 101 38.6
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.4e-10 70.1 84 39.3
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 1.9e-10 69.7 92 42.4
FAN17G1493 Fragaria x ananassa HOM05D000137 ORTHO05D000503 1.9e-10 69.7 97 42.3
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 1.9e-10 69.7 115 33.9
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 2.4e-10 69.3 91 42.9
GSVIVG01011748001 Vitis vinifera HOM05D008822 ORTHO05D003990 2.4e-10 69.3 107 40.2
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 3.2e-10 68.9 92 44.6
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 4.2e-10 68.6 129 32.6
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 5.4e-10 68.2 106 34.0
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 7.1e-10 67.8 83 39.8
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 7.1e-10 67.8 111 38.7
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 9.3e-10 67.4 111 37.8
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.2e-09 67.0 95 42.1
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.2e-09 67.0 83 43.4
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 2.1e-09 66.2 75 42.7
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.7e-09 65.9 76 46.1
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.7e-09 65.9 93 39.8
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.7e-09 65.9 93 39.8
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 3.5e-09 65.5 104 37.5
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 3.5e-09 65.5 107 40.2
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 6.0e-09 64.7 114 36.8
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 6.0e-09 64.7 74 51.4
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 7.8e-09 64.3 62 56.5
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 7.8e-09 64.3 111 36.9
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 7.8e-09 64.3 111 36.9
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.0e-08 63.9 97 39.2
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 1.3e-08 63.5 67 46.3
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.3e-08 62.8 63 47.6
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 3.0e-08 62.4 83 44.6
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 8.7e-08 60.8 69 47.8
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 8.7e-08 60.8 86 40.7
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 1.1e-07 60.5 92 40.2
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 2.5e-07 59.3 63 52.4
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 2.5e-07 59.3 62 46.8
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 2.5e-07 59.3 62 45.2
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 3.3e-07 58.9 67 43.3
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 4.3e-07 58.5 114 35.1
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 5.6e-07 58.2 119 32.8
Os08g0428800 Oryza sativa ssp. japonica HOM05D002447 ORTHO05D001298 5.6e-07 58.2 68 45.6
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 5.6e-07 58.2 64 46.9
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 7.3e-07 57.8 54 53.7
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 7.3e-07 57.8 75 40.0
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 7.3e-07 57.8 68 45.6
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 1.3e-06 57.0 102 40.2
MD14G1235000 Malus domestica HOM05D003305 ORTHO05D001298 1.3e-06 57.0 71 43.7
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 1.6e-06 56.6 63 47.6
RcHm_v2.0_Chr3g0493151 Rosa chinensis HOM05D002447 ORTHO05D001298 2.1e-06 56.2 68 44.1
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 2.8e-06 55.8 68 42.6
DCAR_014730 Daucus carota HOM05D003305 ORTHO05D001298 2.8e-06 55.8 70 41.4
MD17G1258400 Malus domestica HOM05D002447 ORTHO05D001298 2.8e-06 55.8 68 41.2
CSS0023887 Camellia sinensis var. sinensis HOM05D003305 ORTHO05D001298 3.6e-06 55.5 68 41.2
CSS0036038 Camellia sinensis var. sinensis HOM05D003305 ORTHO05D001298 3.6e-06 55.5 68 41.2
ATR0706G126 Amborella trichopoda HOM05D001085 ORTHO05D000895 4.8e-06 55.1 70 41.4
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 4.8e-06 55.1 120 35.8
CSS0006846 Camellia sinensis var. sinensis HOM05D003305 ORTHO05D001298 4.8e-06 55.1 69 40.6
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 4.8e-06 55.1 97 37.1
Cpa.g.sc37.25 Carica papaya HOM05D008822 ORTHO05D003990 4.8e-06 55.1 69 44.9
FvH4_1g28760 Fragaria vesca HOM05D002447 ORTHO05D001298 4.8e-06 55.1 68 42.6
FAN19G0233 Fragaria x ananassa HOM05D002447 ORTHO05D001298 4.8e-06 55.1 68 42.6
GSVIVG01008411001 Vitis vinifera HOM05D003305 ORTHO05D001298 4.8e-06 55.1 68 41.2
Zm00001eb179440 Zea mays HOM05D002447 ORTHO05D001298 4.8e-06 55.1 65 41.5
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 6.2e-06 54.7 63 42.9
arahy.Tifrunner.gnm1.ann1.7X1Y1S Arachis hypogaea HOM05D002447 ORTHO05D001298 6.2e-06 54.7 69 42.0
Lsat_1_v5_gn_2_12280 Lactuca sativa HOM05D003305 ORTHO05D001298 6.2e-06 54.7 70 40.0
Nn4g24189 Nelumbo nucifera HOM05D003305 ORTHO05D001298 6.2e-06 54.7 70 41.4
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 6.2e-06 54.7 62 41.9
Hund02890 Selenicereus undatus HOM05D001085 ORTHO05D000895 6.2e-06 54.7 75 41.3
Zm00001eb212840 Zea mays HOM05D001085 ORTHO05D000895 6.2e-06 54.7 72 36.1
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 8.1e-06 54.3 120 35.0
Cfa007815 Carpinus fangiana HOM05D002447 ORTHO05D001298 8.1e-06 54.3 66 39.4
Ca_17205_v3 Cicer arietinum L. HOM05D003305 ORTHO05D001298 8.1e-06 54.3 69 42.0
HanXRQChr08g0221451 Helianthus annuus HOM05D003305 ORTHO05D001298 8.1e-06 54.3 69 40.6
Manes.02G076600 Manihot esculenta HOM05D002447 ORTHO05D001298 8.1e-06 54.3 69 42.0
Oeu026293.1 Olea europaea HOM05D003305 ORTHO05D001298 8.1e-06 54.3 68 39.7
SEGI_27341 Sequoiadendron giganteum HOM05D001085 ORTHO05D000895 8.1e-06 54.3 87 32.2
TPR.G8262 Trifolium pratense HOM05D002447 ORTHO05D001298 8.1e-06 54.3 66 43.9


User provided reference genes

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