Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 2.2e-26 121.3 54 100.0
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 3.0e-15 84.3 44 93.2
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 3.0e-15 84.3 44 93.2
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.2e-14 82.4 44 88.6
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.6e-14 81.3 44 88.6
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 3.4e-14 80.9 44 86.4
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 4.4e-14 80.5 44 86.4
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 9.8e-14 79.3 44 84.1
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.3e-13 79.0 44 84.1
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.7e-13 78.6 44 84.1
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 7.0e-12 73.2 39 82.1
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 3.5e-11 70.9 44 77.3
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 4.5e-11 70.5 44 77.3
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 7.8e-11 69.7 44 75.0
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 7.8e-11 69.7 44 75.0
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 7.8e-11 69.7 44 75.0
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 1.3e-10 68.9 44 75.0
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.7e-10 68.6 64 59.4
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.3e-10 68.2 44 72.7
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 2.3e-10 68.2 44 72.7
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 2.9e-10 67.8 44 72.7
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.9e-10 67.4 44 72.7
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 5.0e-10 67.0 44 75.0
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.0e-10 67.0 44 70.5
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.0e-10 67.0 44 70.5
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.0e-10 67.0 44 75.0
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 5.0e-10 67.0 44 75.0
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 5.0e-10 67.0 44 72.7
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 8.6e-10 66.2 44 70.5
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 8.6e-10 66.2 44 70.5
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.1e-09 65.9 44 70.5
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.5e-09 65.5 44 70.5
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.5e-09 65.5 44 70.5
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.5e-09 65.5 44 70.5
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.5e-09 65.5 44 65.9
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.9e-09 65.1 44 68.2
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.9e-09 65.1 44 70.5
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.9e-09 65.1 44 70.5
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 2.5e-09 64.7 39 74.4
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 2.5e-09 64.7 44 65.9
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 2.5e-09 64.7 44 70.5
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.3e-09 64.3 39 69.2
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 3.3e-09 64.3 39 71.8
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 3.3e-09 64.3 44 65.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 4.3e-09 63.9 44 68.2
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.3e-09 63.9 44 63.6
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 4.3e-09 63.9 44 63.6
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 4.3e-09 63.9 44 68.2
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 4.3e-09 63.9 44 68.2
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 4.3e-09 63.9 44 63.6
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 4.3e-09 63.9 44 63.6
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 4.3e-09 63.9 44 63.6
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 5.6e-09 63.5 39 69.2
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 5.6e-09 63.5 44 63.6
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 5.6e-09 63.5 39 66.7
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 5.6e-09 63.5 39 71.8
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 9.5e-09 62.8 44 70.5
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 9.5e-09 62.8 44 65.9
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 9.5e-09 62.8 39 64.1
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.2e-08 62.4 44 63.6
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.2e-08 62.4 44 65.9
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.6e-08 62.0 44 65.9
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.6e-08 62.0 44 65.9
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.1e-08 61.6 39 71.8
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.1e-08 61.6 44 65.9
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 2.1e-08 61.6 44 63.6
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 2.8e-08 61.2 40 65.0
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.8e-08 61.2 39 64.1
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.8e-08 61.2 44 68.2
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.8e-08 61.2 44 68.2
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.8e-08 61.2 44 68.2
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 2.8e-08 61.2 40 67.5
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 3.6e-08 60.8 44 65.9
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 3.6e-08 60.8 40 67.5
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.6e-08 60.8 44 63.6
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 3.6e-08 60.8 44 63.6
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 4.7e-08 60.5 44 65.9
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 6.1e-08 60.1 39 64.1
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 6.1e-08 60.1 39 64.1
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 6.1e-08 60.1 39 64.1
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 6.1e-08 60.1 39 64.1
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 8.0e-08 59.7 44 59.1
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 8.0e-08 59.7 55 52.7
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 8.0e-08 59.7 39 69.2
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.0e-07 59.3 44 63.6
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 1.4e-07 58.9 44 63.6
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 1.4e-07 58.9 44 63.6
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.4e-07 58.9 40 57.5
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 2.3e-07 58.2 44 61.4
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 2.3e-07 58.2 44 61.4
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 2.3e-07 58.2 44 61.4
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 2.3e-07 58.2 44 61.4
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 2.3e-07 58.2 44 59.1
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 3.1e-07 57.8 44 61.4
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 3.1e-07 57.8 44 59.1
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 4.0e-07 57.4 44 65.9
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 4.0e-07 57.4 44 61.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 4.0e-07 57.4 44 56.8
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 5.2e-07 57.0 55 50.9
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.2e-07 57.0 55 50.9
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 5.2e-07 57.0 39 64.1
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 6.8e-07 56.6 32 75.0
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 8.9e-07 56.2 39 61.5
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 8.9e-07 56.2 39 61.5
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.2e-06 55.8 44 59.1
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.5e-06 55.5 39 59.0
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.0e-06 55.1 44 54.5
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 3.4e-06 54.3 44 54.5
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.5e-06 53.1 44 54.5
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 7.5e-06 53.1 44 56.8


User provided reference genes

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