Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 4.6e-198 694.5 384 100.0
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 6.1e-134 481.5 387 72.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.1e-122 444.1 386 67.9
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.1e-122 444.1 372 70.4
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 5.9e-113 411.8 392 64.3
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.8e-112 409.1 393 62.6
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.1e-111 407.5 392 61.7
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 3.6e-110 402.5 373 63.3
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.4e-106 390.6 394 61.4
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 9.8e-100 367.9 406 58.4
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.6e-86 323.9 373 55.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 3.1e-85 319.7 373 55.2
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 6.8e-85 318.5 451 49.0
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 3.7e-83 312.8 267 68.5
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.7e-81 306.6 402 53.2
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.7e-73 280.0 400 50.5
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.4e-66 257.7 392 46.2
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.6e-65 254.2 409 46.9
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 6.6e-64 248.8 376 47.1
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 8.7e-64 248.4 397 45.1
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.5e-63 247.7 418 45.7
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 7.3e-63 245.4 384 46.1
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.6e-62 243.0 402 45.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 6.2e-62 242.3 396 46.5
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.1e-61 241.5 406 46.6
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.1e-61 241.5 389 46.5
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.4e-61 240.4 413 45.0
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.1e-61 240.0 391 44.8
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 4.0e-61 239.6 397 44.8
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.5e-60 237.7 395 46.1
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.6e-60 236.9 398 47.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 9.9e-60 235.0 389 45.5
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.2e-58 229.9 376 45.2
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.2e-57 228.0 391 45.0
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.7e-57 226.9 430 42.1
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 3.5e-57 226.5 421 41.8
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.0e-56 223.4 398 42.5
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.1e-56 222.6 398 42.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.5e-55 221.1 396 42.4
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.5e-55 221.1 392 41.6
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.9e-55 220.7 391 41.4
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.9e-55 220.7 394 41.9
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 3.3e-55 219.9 400 44.5
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.3e-55 219.9 397 41.8
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.3e-54 218.0 409 44.3
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.3e-54 218.0 388 45.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.1e-54 217.2 378 42.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 2.1e-54 217.2 392 41.3
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 6.2e-54 215.7 412 42.5
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 6.2e-54 215.7 408 43.1
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-53 214.9 401 43.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.1e-53 214.9 382 43.7
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.4e-53 214.5 384 42.2
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.8e-53 214.2 390 42.1
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.4e-53 213.8 419 39.9
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 4.0e-53 213.0 409 42.8
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 6.9e-53 212.2 390 41.5
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 9.0e-53 211.8 389 41.6
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.0e-53 211.8 408 43.1
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.6e-52 210.3 406 41.4
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.4e-52 209.9 385 44.7
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.5e-52 209.5 397 43.3
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 4.5e-52 209.5 378 42.9
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.8e-52 209.1 391 43.5
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 5.8e-52 209.1 390 40.8
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 7.6e-52 208.8 371 43.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.6e-52 208.8 393 43.8
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.3e-51 208.0 454 39.2
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.3e-51 208.0 422 40.5
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.7e-51 207.6 398 44.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.2e-51 207.2 392 42.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.8e-51 206.5 389 43.2
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 7.1e-50 202.2 401 41.9
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 9.3e-50 201.8 401 41.4
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 9.3e-50 201.8 392 39.5
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.2e-49 201.4 394 42.4
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.2e-49 201.4 386 40.4
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 6.0e-49 199.1 383 39.9
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.8e-48 197.6 375 42.9
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.9e-48 196.4 393 38.9
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 5.1e-48 196.1 396 40.9
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 5.6e-47 192.6 391 41.4
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-46 191.4 390 39.5
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.6e-46 191.0 401 38.9
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 4.8e-46 189.5 328 43.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.8e-45 187.6 334 41.6
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 5.8e-44 182.6 383 38.9
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.0e-43 181.8 413 42.4
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 6.5e-43 179.1 392 42.9
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.5e-43 179.1 400 39.2
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 8.4e-43 178.7 414 38.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 8.4e-43 178.7 413 41.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.5e-42 177.2 423 44.2
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.5e-42 177.2 381 39.4
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.2e-42 176.8 398 40.7
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 7.1e-42 175.6 400 38.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 7.9e-41 172.2 395 36.2
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.9e-40 169.9 327 39.8
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 5.1e-40 169.5 450 34.7
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 8.7e-40 168.7 343 39.7
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.5e-39 167.9 426 38.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.5e-39 167.2 314 41.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.3e-39 166.4 410 38.8
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 7.4e-39 165.6 391 41.2
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 7.4e-39 165.6 391 41.2
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 9.6e-39 165.2 424 39.2
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 9.6e-39 165.2 389 41.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-38 164.5 381 40.7
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.6e-38 164.5 381 40.7
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 4.8e-38 162.9 399 40.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 4.8e-38 162.9 399 40.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 4.8e-38 162.9 399 40.1
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.2e-38 162.2 426 37.1
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 9.0e-37 158.7 399 40.1
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 9.0e-37 158.7 394 37.3
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 9.0e-37 158.7 399 40.1
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.2e-36 158.3 353 38.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 2.5e-34 150.6 343 36.7
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.5e-34 150.6 406 38.7
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 4.2e-34 149.8 400 37.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 4.2e-34 149.8 400 41.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 4.2e-34 149.8 397 33.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.0e-32 145.2 348 36.8
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.0e-32 143.7 195 51.3
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 3.9e-32 143.3 343 39.1
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 8.7e-32 142.1 413 31.5
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 2.5e-31 140.6 371 34.5
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 6.3e-30 136.0 423 36.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.1e-29 135.2 169 55.0
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 1.8e-29 134.4 90 77.8
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.4e-28 130.2 411 37.5
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.2e-27 127.5 414 35.0
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 2.2e-27 127.5 200 46.5
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.0e-27 126.3 274 40.5
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.4e-24 118.2 372 32.0
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.7e-22 111.3 417 35.3
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.7e-22 110.2 250 38.0
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.5e-15 88.2 193 36.3
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.7e-14 84.7 333 32.7
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.2e-14 84.3 198 41.4
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 5.2e-08 63.2 220 36.8
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 6.7e-08 62.8 149 32.2


User provided reference genes

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