Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18384 Trifolium pratense HOM05D003813 ORTHO05D004557 3.8e-154 548.1 275 100.0
Medtr7g080110 Medicago truncatula HOM05D003813 ORTHO05D004557 4.4e-70 268.9 196 75.5
Psat3g102960 Pisum sativum HOM05D003813 ORTHO05D004557 7.6e-70 268.1 196 75.0
Ca_07991_v3 Cicer arietinum L. HOM05D003813 ORTHO05D004557 1.3e-69 267.3 196 74.5
VMungo1383G3136 Vigna mungo HOM05D003813 ORTHO05D004557 3.9e-66 255.8 196 70.4
arahy.Tifrunner.gnm1.ann1.R9V655 Arachis hypogaea HOM05D003813 ORTHO05D004557 5.6e-65 251.9 197 69.5
CANSAT54G2490 Cannabis sativa HOM05D003813 ORTHO05D004557 5.6e-65 251.9 180 73.3
Lj1g0016551 Lotus japonicus HOM05D003813 ORTHO05D004557 5.6e-65 251.9 197 68.5
MD04G1245300 Malus domestica HOM05D003813 ORTHO05D004557 7.3e-65 251.5 180 72.8
CiPaw.08G114700 Carya illinoinensis HOM05D003813 ORTHO05D004557 9.6e-65 251.1 188 69.7
Glyma.18G242500 Glycine max HOM05D003813 ORTHO05D004557 9.6e-65 251.1 180 75.0
Potri.013G085600 Populus trichocarpa HOM05D003813 ORTHO05D004557 9.6e-65 251.1 180 73.9
Potri.019G053600 Populus trichocarpa HOM05D003813 ORTHO05D004557 9.6e-65 251.1 180 73.9
Aqoxy2G04029 Aquilegia oxysepala HOM05D003813 ORTHO05D004557 2.1e-64 250.0 188 71.8
Manes.13G005100 Manihot esculenta HOM05D003813 ORTHO05D004557 2.1e-64 250.0 180 72.2
Phvul.008G054000 Phaseolus vulgaris HOM05D003813 ORTHO05D004557 2.8e-64 249.6 196 68.9
Prupe.6G361900 Prunus persica HOM05D003813 ORTHO05D004557 2.8e-64 249.6 180 72.8
QL01p049619 Quercus lobata HOM05D003813 ORTHO05D004557 3.6e-64 249.2 187 70.1
FAN05G0002 Fragaria x ananassa HOM05D003813 ORTHO05D004557 4.8e-64 248.8 180 72.8
MD12G1086500 Malus domestica HOM05D003813 ORTHO05D004557 6.2e-64 248.4 180 71.7
TWI36G0808 Tripterygium wilfordii HOM05D003813 ORTHO05D004557 8.1e-64 248.1 180 71.7
FAN02G0116 Fragaria x ananassa HOM05D003813 ORTHO05D004557 1.1e-63 247.7 180 72.2
FAN09G4891 Fragaria x ananassa HOM05D003813 ORTHO05D004557 1.1e-63 247.7 180 72.2
RcHm_v2.0_Chr3g0447821 Rosa chinensis HOM05D003813 ORTHO05D004557 1.1e-63 247.7 180 72.2
Manes.12G005200 Manihot esculenta HOM05D003813 ORTHO05D004557 1.4e-63 247.3 180 71.7
TWI75G0041 Tripterygium wilfordii HOM05D003813 ORTHO05D004557 1.4e-63 247.3 180 71.7
FvH4_6g00450 Fragaria vesca HOM05D003813 ORTHO05D004557 2.4e-63 246.5 180 71.7
Gohir.A05G392700 Gossypium hirsutum HOM05D003813 ORTHO05D004557 2.4e-63 246.5 180 71.1
Actinidia03285 Actinidia chinensis HOM05D003813 ORTHO05D004557 3.1e-63 246.1 180 72.2
Gorai.004G262900 Gossypium raimondii HOM05D003813 ORTHO05D004557 3.1e-63 246.1 188 68.6
Gohir.A08G226000 Gossypium hirsutum HOM05D003813 ORTHO05D004557 4.0e-63 245.7 188 68.6
CiPaw.07G081100 Carya illinoinensis HOM05D003813 ORTHO05D004557 6.9e-63 245.0 188 68.6
COL.COLO4_38033 Corchorus olitorius HOM05D003813 ORTHO05D004557 6.9e-63 245.0 180 71.7
Dinv29094 Davidia involucrata HOM05D003813 ORTHO05D004557 6.9e-63 245.0 180 71.7
Glyma.09G249900 Glycine max HOM05D003813 ORTHO05D004557 6.9e-63 245.0 180 72.2
Thecc.05G194200 Theobroma cacao HOM05D003813 ORTHO05D004557 6.9e-63 245.0 180 71.1
Gorai.012G026900 Gossypium raimondii HOM05D003813 ORTHO05D004557 9.0e-63 244.6 180 70.6
Gohir.D08G246400 Gossypium hirsutum HOM05D003813 ORTHO05D004557 1.2e-62 244.2 188 68.6
MSTRG.27392 Avicennia marina HOM05D003813 ORTHO05D004557 2.0e-62 243.4 196 66.8
Lalb_Chr01g0020461 Lupinus albus HOM05D003813 ORTHO05D004557 2.0e-62 243.4 179 72.1
TAR365G1231 Trochodendron aralioides HOM05D003813 ORTHO05D004557 2.0e-62 243.4 180 71.7
Gohir.D04G024400 Gossypium hirsutum HOM05D003813 ORTHO05D004557 3.4e-62 242.7 180 70.6
PGR119G1052 Punica granatum HOM05D003813 ORTHO05D004557 3.4e-62 242.7 196 65.3
Cc09_g03710 Coffea canephora HOM05D003813 ORTHO05D004557 4.4e-62 242.3 197 66.0
Dinv10505 Davidia involucrata HOM05D003813 ORTHO05D004557 4.4e-62 242.3 179 72.6
Actinidia06802 Actinidia chinensis HOM05D003813 ORTHO05D004557 5.8e-62 241.9 180 70.6
Sabra13G0078100 Salix brachista HOM05D003813 ORTHO05D004557 9.9e-62 241.1 180 70.6
Lsat_1_v5_gn_2_108360 Lactuca sativa HOM05D003813 ORTHO05D004557 1.7e-61 240.4 180 70.0
GSVIVG01019078001 Vitis vinifera HOM05D003813 ORTHO05D004557 1.7e-61 240.4 180 70.6
Duzib177G0044 Durio zibethinus HOM05D003813 ORTHO05D004557 2.2e-61 240.0 196 66.3
arahy.Tifrunner.gnm1.ann1.424XKM Arachis hypogaea HOM05D003813 ORTHO05D004557 2.9e-61 239.6 194 67.0
arahy.Tifrunner.gnm1.ann1.U6L591 Arachis hypogaea HOM05D003813 ORTHO05D004557 2.9e-61 239.6 194 67.0
Ciclev10011861m.g Citrus clementina HOM05D003813 ORTHO05D004557 2.9e-61 239.6 180 69.4
Duzib128G2042 Durio zibethinus HOM05D003813 ORTHO05D004557 3.8e-61 239.2 180 70.6
CsaV3_2G010490 Cucumis sativus L. HOM05D003813 ORTHO05D004557 4.9e-61 238.8 180 68.9
Lalb_Chr02g0149471 Lupinus albus HOM05D003813 ORTHO05D004557 4.9e-61 238.8 196 65.3
ClCG11G009850 Citrullus lanatus HOM05D003813 ORTHO05D004557 6.4e-61 238.4 180 68.9
MELO3C008571.2 Cucumis melo HOM05D003813 ORTHO05D004557 6.4e-61 238.4 180 68.9
ECA238G1935 Erigeron canadensis HOM05D003813 ORTHO05D004557 6.4e-61 238.4 180 69.4
HanXRQChr14g0454791 Helianthus annuus HOM05D003813 ORTHO05D004557 6.4e-61 238.4 180 68.9
AUR62000304 Chenopodium quinoa HOM05D003813 ORTHO05D004557 8.4e-61 238.0 188 65.4
Oeu046890.2 Olea europaea HOM05D003813 ORTHO05D004557 8.4e-61 238.0 188 66.0
AUR62006649 Chenopodium quinoa HOM05D003813 ORTHO05D004557 1.1e-60 237.7 188 65.4
Duzib106G0094 Durio zibethinus HOM05D003813 ORTHO05D004557 1.1e-60 237.7 179 70.4
Duzib128G0856 Durio zibethinus HOM05D003813 ORTHO05D004557 1.1e-60 237.7 180 70.0
SGA_v2.0_scaffold62G21499 Striga asiatica HOM05D002483 ORTHO05D004557 1.1e-60 237.7 188 66.5
unitig_26.g9578 Utricularia gibba HOM05D003813 ORTHO05D004557 1.1e-60 237.7 188 66.0
DCAR_024893 Daucus carota HOM05D003813 ORTHO05D004557 1.4e-60 237.3 188 66.0
HanXRQChr07g0194781 Helianthus annuus HOM05D003813 ORTHO05D004557 1.4e-60 237.3 180 68.9
SalBow1G2501 Salvia bowleyana HOM05D003813 ORTHO05D004557 1.9e-60 236.9 188 66.0
Nn1g09834 Nelumbo nucifera HOM05D003813 ORTHO05D004557 2.4e-60 236.5 188 66.5
Nitab4.5_0000083g0110 Nicotiana tabacum HOM05D003813 ORTHO05D004557 2.4e-60 236.5 188 67.0
PSO170G3829 Papaver somniferum HOM05D003813 ORTHO05D004557 2.4e-60 236.5 180 68.3
PSO357G0157 Papaver somniferum HOM05D003813 ORTHO05D004557 2.4e-60 236.5 180 68.3
Migut.F01871 Erythranthe guttata HOM05D003813 ORTHO05D004557 3.2e-60 236.1 188 64.9
Hma1.2p1_0609F.1_g188350 Hydrangea macrophylla HOM05D003813 ORTHO05D004557 3.2e-60 236.1 179 68.7
vmacro10403 Vaccinium macrocarpon HOM05D003813 ORTHO05D004557 3.2e-60 236.1 180 68.9
MSTRG.8209 Avicennia marina HOM05D003813 ORTHO05D004557 5.4e-60 235.3 196 64.8
EL10Ac4g09959 Beta vulgaris HOM05D003813 ORTHO05D004557 5.4e-60 235.3 188 64.4
PGR031G2727 Punica granatum HOM05D003813 ORTHO05D004557 7.1e-60 235.0 180 68.3
TAR636G0205 Trochodendron aralioides HOM05D003813 ORTHO05D004557 7.1e-60 235.0 180 68.3
Lalb_Chr21g0311461 Lupinus albus HOM05D003813 ORTHO05D004557 9.3e-60 234.6 180 68.3
THA.LOC104821913 Tarenaya hassleriana HOM05D003813 ORTHO05D004557 9.3e-60 234.6 196 62.2
Nitab4.5_0001435g0070 Nicotiana tabacum HOM05D003813 ORTHO05D004557 1.2e-59 234.2 188 67.0
Nitab4.5_0000971g0050 Nicotiana tabacum HOM05D003813 ORTHO05D004557 1.6e-59 233.8 188 66.0
Nitab4.5_0006298g0010 Nicotiana tabacum HOM05D003813 ORTHO05D004557 1.6e-59 233.8 188 66.0
Peaxi162Scf00156g00215 Petunia axillaris HOM05D003813 ORTHO05D004557 1.6e-59 233.8 188 66.5
unitig_749.g13493 Utricularia gibba HOM05D003813 ORTHO05D004557 1.6e-59 233.8 188 64.9
Ah.06g195440 Amaranthus hybridus HOM05D003813 ORTHO05D004557 3.5e-59 232.6 180 66.7
Sed0016020 Sechium edule HOM05D003813 ORTHO05D004557 7.9e-59 231.5 180 66.7
Solyc05g055770.3 Solanum lycopersicum HOM05D003813 ORTHO05D004557 1.0e-58 231.1 188 64.9
Sopen05g034180 Solanum pennellii HOM05D003813 ORTHO05D004557 1.0e-58 231.1 188 64.9
Ah.04g159020 Amaranthus hybridus HOM05D003813 ORTHO05D004557 1.7e-58 230.3 188 62.8
CSS0027041 Camellia sinensis var. sinensis HOM05D003813 ORTHO05D004557 1.7e-58 230.3 180 67.2
Rhsim09G0130400 Rhododendron simsii HOM05D003813 ORTHO05D004557 2.3e-58 229.9 180 66.7
PGSC0003DMG400023474 Solanum tuberosum HOM05D003813 ORTHO05D004557 3.9e-58 229.2 188 64.4
CAN.G694.22 Capsicum annuum HOM05D003813 ORTHO05D004557 5.1e-58 228.8 188 64.4
Haze_04566 Corylus avellana HOM05D003813 ORTHO05D004557 5.1e-58 228.8 243 53.5
ATR0215G022 Amborella trichopoda HOM05D003813 ORTHO05D004557 6.6e-58 228.4 180 67.2
BcaC03g14684 Brassica carinata HOM05D003813 ORTHO05D004557 6.6e-58 228.4 196 60.2
BolC2t08264H Brassica oleracea HOM05D003813 ORTHO05D004557 6.6e-58 228.4 196 60.2
Hund07351 Selenicereus undatus HOM05D003813 ORTHO05D004557 6.6e-58 228.4 180 65.0
BraA02t06366Z Brassica rapa HOM05D003813 ORTHO05D004557 1.5e-57 227.3 196 59.7
C02p21240 Brassica napus HOM05D003813 ORTHO05D004557 2.5e-57 226.5 196 59.7
CSS0003666 Camellia sinensis var. sinensis HOM05D003813 ORTHO05D004557 2.5e-57 226.5 180 66.1
CDE06G0032 Ceratophyllum demersum HOM05D003813 ORTHO05D004557 2.5e-57 226.5 188 63.8
Eucgr.H01394 Eucalyptus grandis HOM05D003813 ORTHO05D004557 2.5e-57 226.5 180 65.6
Hund21902 Selenicereus undatus HOM05D003813 ORTHO05D004557 2.5e-57 226.5 180 63.9
Zm00001eb200810 Zea mays HOM05D003813 ORTHO05D004557 2.5e-57 226.5 187 63.6
Carub.0002s1075 Capsella rubella HOM05D003813 ORTHO05D004557 3.3e-57 226.1 197 58.4
MD13G1060900 Malus domestica HOM05D003813 ORTHO05D004557 4.3e-57 225.7 167 70.1
Sp5g19900 Schrenkiella parvula HOM05D003813 ORTHO05D004557 4.3e-57 225.7 196 58.7
Os11g0414000 Oryza sativa ssp. japonica HOM05D003813 ORTHO05D004557 5.6e-57 225.3 187 63.6
HPP92_020238 Vanilla planifolia HOM05D003813 ORTHO05D004557 5.6e-57 225.3 179 65.4
A02p13100 Brassica napus HOM05D003813 ORTHO05D004557 7.3e-57 224.9 196 59.2
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 7.3e-57 224.9 179 63.7
THA.LOC104823808 Tarenaya hassleriana HOM05D003813 ORTHO05D004557 1.3e-56 224.2 179 63.7
BcaB05g24096 Brassica carinata HOM05D003813 ORTHO05D004557 1.6e-56 223.8 196 59.2
Sc09g0001440 Simmondsia chinensis HOM05D003813 ORTHO05D004557 1.6e-56 223.8 180 65.0
THA.LOC104805704 Tarenaya hassleriana HOM05D003813 ORTHO05D004557 2.1e-56 223.4 196 59.2
AL2G20220 Arabidopsis lyrata HOM05D003813 ORTHO05D004557 2.8e-56 223.0 197 57.9
AT1G65220 Arabidopsis thaliana HOM05D003813 ORTHO05D004557 2.8e-56 223.0 197 57.9
Zm00001eb090730 Zea mays HOM05D003813 ORTHO05D004557 2.8e-56 223.0 187 63.1
Aa31LG2G2350 Aethionema arabicum HOM05D003813 ORTHO05D004557 3.6e-56 222.6 197 59.4
CDE02G2989 Ceratophyllum demersum HOM05D003813 ORTHO05D004557 3.6e-56 222.6 188 62.8
BcaB02g08039 Brassica carinata HOM05D003813 ORTHO05D004557 6.2e-56 221.9 180 62.8
A05p16340 Brassica napus HOM05D003813 ORTHO05D004557 6.2e-56 221.9 180 62.8
C06p17610 Brassica napus HOM05D003813 ORTHO05D004557 6.2e-56 221.9 180 62.8
BraA05t20541Z Brassica rapa HOM05D003813 ORTHO05D004557 6.2e-56 221.9 180 62.8
BcaC08g44332 Brassica carinata HOM05D003813 ORTHO05D004557 8.1e-56 221.5 179 62.6
BolC6t36955H Brassica oleracea HOM05D003813 ORTHO05D004557 8.1e-56 221.5 179 62.6
Sp7g05930 Schrenkiella parvula HOM05D003813 ORTHO05D004557 4.0e-55 219.2 180 61.7
CARHR056830 Cardamine hirsuta HOM05D003813 ORTHO05D004557 5.3e-55 218.8 197 57.9
Eucgr.B01418 Eucalyptus grandis HOM05D003813 ORTHO05D004557 2.0e-54 216.9 180 62.8
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 2.0e-54 216.9 183 67.2
Aa31LG9G17930 Aethionema arabicum HOM05D003813 ORTHO05D004557 2.6e-54 216.5 196 57.1
HanXRQChr01g0006971 Helianthus annuus HOM05D003813 ORTHO05D004557 2.6e-54 216.5 184 62.5
AT5G36230 Arabidopsis thaliana HOM05D003813 ORTHO05D004557 4.5e-54 215.7 180 59.4
AL7G45160 Arabidopsis lyrata HOM05D003813 ORTHO05D004557 1.3e-53 214.2 180 58.9
Thhalv10004315m.g Eutrema salsugineum HOM05D003813 ORTHO05D004557 1.7e-53 213.8 180 60.6
Oeu062047.1 Olea europaea HOM05D003813 ORTHO05D004557 2.2e-53 213.4 163 69.3
CARHR216500 Cardamine hirsuta HOM05D003813 ORTHO05D004557 2.9e-53 213.0 180 58.9
Carub.0007s3190 Capsella rubella HOM05D003813 ORTHO05D004557 6.4e-53 211.8 197 56.3
BcaB06g27011 Brassica carinata HOM05D003813 ORTHO05D004557 1.9e-52 210.3 196 56.6
Cfa006257 Carpinus fangiana HOM05D002282 ORTHO05D004557 4.2e-52 209.1 166 66.3
Pp3c19_1810 Physcomitrium patens HOM05D003813 ORTHO05D004557 1.2e-51 207.6 180 58.3
AagrBONN_evm.TU.Sc2ySwM_228.1258 Anthoceros agrestis HOM05D003813 ORTHO05D004557 1.6e-51 207.2 194 55.7
Lj1C575G1 Lonicera japonica HOM05D003813 ORTHO05D004557 5.1e-50 202.2 158 67.1
Lj1C595G1 Lonicera japonica HOM05D003813 ORTHO05D004557 5.1e-50 202.2 158 67.1
SMO340G0078 Selaginella moellendorffii HOM05D003813 ORTHO05D004557 8.7e-50 201.4 188 54.8
Mapoly0005s0128 Marchantia polymorpha HOM05D003813 ORTHO05D004557 1.5e-49 200.7 180 57.2
Pp3c18_18860 Physcomitrium patens HOM05D003813 ORTHO05D004557 1.9e-49 200.3 179 56.4
Migut.F02121 Erythranthe guttata HOM05D003813 ORTHO05D004557 3.3e-49 199.5 166 64.5
Atru.chr12.1771 Acer truncatum HOM05D003813 ORTHO05D004557 1.6e-48 197.2 166 63.3
Pp3c21_10580 Physcomitrium patens HOM05D003813 ORTHO05D004557 1.3e-45 187.6 171 54.4
CBR_g21840 Chara braunii HOM05D003813 ORTHO05D004557 6.3e-40 168.7 188 47.9
TPR.G31806 Trifolium pratense HOM05D003813 ORTHO05D004557 2.4e-39 166.8 107 85.0
Rhsim02G0249700 Rhododendron simsii HOM05D003813 ORTHO05D004557 3.8e-37 159.5 168 55.4
Lsat_1_v5_gn_2_49320 Lactuca sativa HOM05D003813 ORTHO05D004557 5.0e-37 159.1 129 66.7
Thhalv10018708m.g Eutrema salsugineum HOM05D003813 ORTHO05D004557 1.1e-36 157.9 139 55.4
Lalb_Chr03g0038661 Lupinus albus HOM05D003813 ORTHO05D004557 3.5e-35 152.9 103 77.7
FAN19G1016 Fragaria x ananassa HOM05D003813 ORTHO05D004557 2.8e-32 143.3 93 78.5
FvH4_1g28180 Fragaria vesca HOM05D003813 ORTHO05D004557 8.2e-32 141.7 93 77.4
FAN05G4209 Fragaria x ananassa HOM05D003813 ORTHO05D004557 1.7e-29 134.0 93 73.1
Cpa.g.sc39.12 Carica papaya HOM05D003813 ORTHO05D004557 6.7e-26 122.1 89 68.5
Cre06.g298350 Chlamydomonas reinhardtii HOM05D003813 ORTHO05D004557 3.3e-25 119.8 197 32.5
Aqoxy6G02348 Aquilegia oxysepala HOM05D003813 ORTHO05D004557 2.8e-24 116.7 89 69.7
CBR_g11137 Chara braunii HOM05D003813 ORTHO05D004557 2.6e-17 93.6 99 46.5
MD00G1113300 Malus domestica HOM05D003813 ORTHO05D004557 4.8e-16 89.4 56 83.9
Haze_26180 Corylus avellana HOM05D003813 ORTHO05D004557 8.2e-16 88.6 195 30.3
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 3.6e-11 73.2 58 65.5
CAN.G96.1 Capsicum annuum HOM05D003813 ORTHO05D004557 3.6e-11 73.2 68 60.3
Ah.04g149830 Amaranthus hybridus HOM05D000001 ORTHO05D011365 2.3e-10 70.5 34 88.2
CAN.G1086.2 Capsicum annuum HOM05D003813 ORTHO05D004557 6.3e-08 62.4 56 64.3
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 3.5e-06 56.6 63 44.4
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 4.5e-06 56.2 62 43.5
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 5.9e-06 55.8 62 43.5
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 7.7e-06 55.5 55 47.3


User provided reference genes

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