Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 4.7e-277 957.2 477 100.0
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 5.1e-239 830.9 508 84.3
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 5.6e-222 774.2 507 78.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-218 763.1 507 78.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.6e-213 746.1 506 76.5
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.5e-190 669.8 491 71.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-189 666.8 512 70.5
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.5e-182 643.3 509 65.6
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.1e-177 627.1 509 64.0
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 6.5e-170 601.3 509 62.3
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.7e-165 586.6 509 61.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.1e-156 557.4 515 59.4
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.9e-153 546.6 512 58.6
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.6e-152 543.5 515 58.1
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 2.4e-111 406.8 476 49.4
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.4e-108 397.5 520 45.6
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 9.0e-103 378.3 503 45.1
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 5.8e-102 375.6 519 45.7
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 8.4e-101 371.7 512 44.9
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-100 371.3 519 45.1
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.4e-100 370.9 512 44.9
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.9e-100 370.5 512 45.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.5e-99 366.3 509 44.2
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 5.7e-97 359.0 533 42.2
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 7.4e-97 358.6 529 40.6
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.3e-96 355.5 501 43.1
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 8.2e-96 355.1 522 42.7
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 8.2e-96 355.1 526 42.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.1e-95 353.2 497 45.3
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 5.3e-95 352.4 604 38.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 9.0e-95 351.7 528 41.7
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.5e-94 350.9 516 41.5
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.6e-94 350.1 493 41.6
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.5e-94 349.4 523 43.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.3e-93 347.8 502 42.6
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 6.5e-93 345.5 485 42.7
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.1e-92 344.7 514 42.8
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.6e-91 340.9 514 39.5
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.0e-90 336.7 546 38.8
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-89 334.7 536 40.7
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.2e-88 330.5 519 41.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.1e-87 328.2 517 39.8
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.5e-86 322.8 531 40.9
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 6.5e-85 318.9 521 39.2
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.1e-84 318.2 508 40.9
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.9e-83 312.0 512 38.7
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 7.7e-78 295.4 502 37.6
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 5.0e-77 292.7 631 35.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 5.0e-77 292.7 665 32.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 8.5e-77 292.0 656 32.9
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.6e-75 287.7 635 35.6
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 3.6e-75 286.6 540 36.3
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.7e-75 286.2 512 37.1
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.3e-74 283.9 594 34.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.7e-74 282.3 538 36.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.2e-72 277.3 522 37.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.8e-72 276.9 504 40.3
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.8e-72 276.9 518 37.3
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 4.8e-72 276.2 434 40.1
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.1e-71 275.0 522 36.8
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 3.1e-71 273.5 525 37.0
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.2e-70 271.6 470 38.9
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 3.5e-70 270.0 530 36.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.5e-70 270.0 528 37.1
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 5.9e-70 269.2 498 37.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.2e-69 267.3 538 36.1
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 5.0e-69 266.2 512 35.9
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 4.2e-68 263.1 524 38.0
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 7.2e-68 262.3 491 36.3
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.7e-67 260.4 520 36.3
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 4.7e-67 259.6 515 36.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 6.1e-67 259.2 489 36.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.1e-67 259.2 538 34.0
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.0e-66 258.5 511 34.2
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 2.3e-66 257.3 719 30.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 2.6e-65 253.8 502 33.7
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.4e-65 253.1 503 34.0
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 9.7e-65 251.9 431 36.9
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 9.7e-65 251.9 519 37.0
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.7e-64 251.1 511 35.2
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 2.2e-64 250.8 521 35.7
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 4.8e-64 249.6 500 36.2
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 6.3e-64 249.2 545 34.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 7.0e-63 245.7 531 35.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.0e-62 244.2 488 35.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.5e-62 243.0 499 35.5
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 7.7e-62 242.3 480 35.0
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.5e-60 238.0 407 37.3
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.5e-60 236.1 553 31.3
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.0e-58 231.9 561 33.5
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.8e-58 228.8 672 31.5
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.0e-57 227.6 506 31.8
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 9.8e-57 225.3 538 32.3
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.1e-55 221.9 476 35.9
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.4e-55 221.5 553 30.2
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 6.5e-53 212.6 465 33.5
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.5e-52 209.5 413 39.0
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.2e-52 209.1 414 38.6
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 8.0e-51 205.7 468 33.8
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-50 204.9 477 32.1
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.2e-49 201.8 510 32.7
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 6.6e-45 186.0 197 49.7
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.8e-42 177.9 503 30.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.2e-40 171.0 546 28.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.2e-40 171.0 245 40.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 6.4e-40 169.5 325 36.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.8e-39 167.9 355 33.2
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 9.2e-39 165.6 522 27.4
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 7.8e-38 162.5 284 35.9
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.8e-38 162.5 242 39.3
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 5.6e-36 156.4 239 38.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.6e-35 154.8 239 39.7
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 2.1e-35 154.5 238 39.5
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 2.1e-35 154.5 238 39.5
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.1e-35 154.5 230 39.1
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.6e-35 153.7 221 39.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.2e-35 152.9 245 39.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.2e-35 152.9 250 37.6
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 6.2e-35 152.9 545 27.7
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 8.0e-35 152.5 262 37.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 8.0e-35 152.5 239 39.3
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.1e-34 152.1 473 30.4
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.8e-34 151.4 230 39.1
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.3e-34 151.0 457 29.5
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 4.0e-34 150.2 239 38.9
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.5e-33 148.3 237 36.7
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.4e-33 147.1 428 28.3
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.4e-33 146.7 223 37.7
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.8e-33 146.4 237 38.0
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.1e-31 140.2 272 34.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.0e-30 137.9 400 30.2
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.0e-30 137.9 400 30.2
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 8.6e-29 132.5 291 32.6
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 8.6e-29 132.5 354 30.2
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.9e-28 131.3 161 44.1
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.3e-28 130.2 358 30.2
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 9.5e-28 129.0 355 30.4
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.1e-26 125.6 358 29.6
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.2e-26 123.2 454 26.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.5e-25 121.7 414 28.0
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-19 102.1 105 50.5
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.4e-17 94.0 220 31.4
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 9.2e-15 85.9 382 23.3
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.2e-14 85.5 497 25.8
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.0e-13 82.4 468 23.7
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.1e-13 80.1 73 46.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.1e-11 74.7 285 26.0
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.4e-10 72.0 120 32.5
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 7.6e-09 66.2 100 33.0
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.7e-08 65.1 44 63.6
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-07 60.5 98 29.6


User provided reference genes

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