Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 2.7e-152 542.0 269 100.0
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.6e-125 453.0 267 83.9
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 7.6e-115 417.5 253 81.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 8.4e-114 414.1 268 78.4
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 9.6e-110 400.6 253 78.3
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.3e-106 390.2 260 75.4
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 2.2e-106 389.4 267 71.5
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 7.8e-104 380.9 255 74.9
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 6.4e-98 361.3 253 69.6
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 2.1e-93 346.3 259 68.0
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.8e-93 345.9 264 67.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 3.4e-91 339.0 229 72.9
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.0e-87 325.9 272 62.9
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 4.0e-84 315.5 211 72.0
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 8.4e-82 307.8 225 68.9
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 5.1e-79 298.5 287 56.8
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.9e-75 285.0 267 55.8
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.2e-74 283.1 265 53.2
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.8e-74 282.3 250 55.6
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.4e-73 280.4 259 52.1
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.9e-73 280.0 267 53.9
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.2e-73 279.3 267 54.7
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 9.3e-73 277.7 251 54.2
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.2e-72 277.3 268 55.2
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.6e-72 276.9 273 53.5
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.6e-72 276.9 259 55.6
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.1e-72 276.6 250 53.6
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.6e-72 275.8 257 53.3
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.6e-72 275.4 260 53.1
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.1e-72 275.0 251 54.6
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.3e-71 273.9 260 51.2
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.3e-71 273.1 260 53.8
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.3e-71 273.1 240 53.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.0e-71 272.7 259 52.9
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 8.7e-71 271.2 267 53.9
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.1e-70 270.8 259 52.5
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.2e-69 266.5 261 53.3
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 1.8e-68 263.5 261 52.5
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.1e-68 262.3 269 51.3
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 5.3e-68 261.9 243 51.9
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.3e-68 261.9 241 54.4
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 6.9e-68 261.5 261 49.8
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.5e-67 260.4 267 49.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.5e-67 258.8 252 51.2
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 7.7e-67 258.1 252 52.0
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.3e-66 257.3 260 51.2
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.7e-66 256.9 265 51.7
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.2e-66 256.5 240 52.1
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 6.5e-66 255.0 262 50.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 3.2e-65 252.7 269 49.1
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 7.2e-65 251.5 254 50.0
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 9.4e-65 251.1 209 58.4
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.1e-64 250.0 252 50.8
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.7e-64 249.6 259 50.6
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 3.6e-64 249.2 243 50.6
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 7.9e-64 248.1 260 46.9
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 1.0e-63 247.7 243 49.4
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.4e-63 247.3 262 50.4
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.0e-63 246.1 252 50.8
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 5.1e-63 245.4 257 48.2
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.7e-63 245.0 256 50.0
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.1e-62 244.2 243 49.0
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 3.3e-62 242.7 254 48.8
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 3.3e-62 242.7 251 50.6
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.4e-62 242.3 259 50.2
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.8e-61 239.6 251 48.2
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.8e-61 239.6 259 48.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.8e-61 239.6 261 49.4
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 4.8e-61 238.8 256 48.8
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.3e-61 238.4 267 46.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 6.3e-61 238.4 256 48.4
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.8e-60 236.9 251 48.6
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.1e-60 235.7 267 44.6
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-60 235.7 259 48.3
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 4.1e-60 235.7 261 48.3
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.2e-59 234.2 244 50.0
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.2e-59 234.2 245 52.7
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.5e-59 233.8 258 46.9
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.4e-59 232.6 225 50.2
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.2e-58 229.9 232 50.0
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.2e-58 229.9 219 53.4
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.8e-58 229.2 267 44.6
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 8.5e-58 228.0 242 48.8
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 3.2e-57 226.1 229 47.2
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 5.5e-57 225.3 268 44.8
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.5e-57 225.3 245 49.0
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 7.2e-57 224.9 283 45.9
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.6e-56 223.8 199 53.8
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.1e-56 223.4 268 46.6
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.7e-56 222.2 272 46.3
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 4.7e-56 222.2 282 45.7
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.8e-55 220.3 225 50.2
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 5.2e-55 218.8 268 44.8
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 6.7e-55 218.4 269 45.4
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 8.8e-55 218.0 267 45.3
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 8.8e-55 218.0 267 45.3
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 8.8e-55 218.0 267 45.3
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.8e-55 218.0 220 47.3
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.5e-54 217.2 272 44.5
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 3.3e-54 216.1 268 45.1
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 5.7e-54 215.3 259 43.2
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 9.7e-54 214.5 267 44.9
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.3e-53 214.2 273 43.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.2e-53 213.4 250 46.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.8e-53 213.0 264 43.6
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.4e-52 210.7 232 47.4
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.4e-52 210.7 270 46.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.8e-52 210.3 250 45.6
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-52 210.3 268 46.6
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.4e-52 209.9 269 43.5
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.4e-52 209.9 269 43.5
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 4.1e-52 209.1 293 42.0
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.3e-52 208.8 270 43.7
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.6e-51 207.2 232 44.8
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.0e-51 206.8 248 45.2
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 4.5e-51 205.7 233 47.6
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 7.7e-51 204.9 189 52.4
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.3e-50 204.1 177 53.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 5.0e-50 202.2 280 42.9
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 5.0e-50 202.2 253 43.5
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 6.5e-50 201.8 278 43.2
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.9e-49 200.3 297 39.7
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 2.5e-49 199.9 239 42.3
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 4.2e-49 199.1 269 42.0
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 4.2e-49 199.1 269 42.0
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 4.2e-49 199.1 203 51.2
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 7.2e-49 198.4 246 45.1
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 9.4e-49 198.0 221 43.0
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.1e-48 196.8 269 43.1
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.0e-47 193.0 210 47.1
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.0e-47 193.0 275 42.5
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.2e-47 192.2 284 40.5
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.0e-46 190.3 258 40.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.3e-46 189.5 212 45.3
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 4.4e-46 189.1 178 53.4
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 2.8e-45 186.4 219 42.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.8e-45 186.4 267 44.6
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.8e-45 186.4 255 42.7
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.7e-45 186.0 211 43.6
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 6.3e-45 185.3 211 44.1
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.5e-43 179.5 172 51.2
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.0e-42 177.9 267 40.1
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 5.0e-42 175.6 178 50.6
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 6.5e-42 175.3 178 49.4
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.5e-41 174.1 224 43.3
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.8e-39 167.2 160 49.4
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-39 167.2 187 46.0
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.8e-39 165.2 260 38.8
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.7e-37 160.6 243 39.5
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.4e-36 156.8 228 39.5
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 5.4e-36 155.6 258 35.7
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.7e-35 153.3 142 50.7
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 9.5e-33 144.8 219 42.0
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 4.0e-31 139.4 217 38.7
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.5e-30 137.5 167 40.7
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.2e-29 133.7 128 52.3
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.8e-29 133.3 316 28.8
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.8e-29 133.3 100 59.0
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.8e-28 130.6 225 36.0
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.0e-28 128.6 179 40.2
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.7e-27 126.7 300 28.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.6e-25 119.0 79 69.6
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 5.6e-25 119.0 227 30.8
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.5e-25 118.2 230 33.5
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 8.0e-24 115.2 95 61.1
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 2.2e-21 107.1 163 39.3
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 6.4e-21 105.5 83 60.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.1e-20 104.8 267 30.7
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-20 104.0 196 34.7
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 2.4e-20 103.6 267 30.7
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 3.2e-20 103.2 137 42.3
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.7e-18 97.4 148 39.2
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 6.6e-18 95.5 77 55.8
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.1e-15 88.2 132 37.1
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 2.4e-12 77.0 135 40.7
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-12 75.9 167 31.1
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.6e-11 72.8 71 45.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.3e-10 70.5 125 36.0
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 2.1e-08 63.9 43 69.8
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.1e-08 63.9 73 43.8
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 2.3e-07 60.5 78 39.7
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 4.0e-07 59.7 41 63.4
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 6.8e-07 58.9 103 35.0
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 7.5e-06 55.5 60 50.0


User provided reference genes

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