Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17977 Trifolium pratense HOM05D003356 ORTHO05D030555 5.5e-139 497.7 257 100.0
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 3.7e-42 176.0 176 62.5
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 4.5e-40 169.1 171 59.6
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 1.0e-39 167.9 176 59.1
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 1.3e-39 167.5 176 59.7
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 1.7e-39 167.2 171 59.1
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 1.1e-38 164.5 171 57.3
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 1.4e-38 164.1 171 57.9
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 2.7e-37 159.8 172 55.8
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 2.7e-37 159.8 172 55.8
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 1.0e-36 157.9 171 57.3
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 3.9e-36 156.0 170 55.3
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 1.1e-35 154.5 170 55.3
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 1.1e-35 154.5 170 54.1
Lalb_Chr19g0134291 Lupinus albus HOM05D003356 ORTHO05D004362 1.5e-35 154.1 171 55.0
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 2.5e-35 153.3 176 54.0
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 9.7e-35 151.4 176 52.8
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 2.8e-34 149.8 169 52.7
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 2.8e-34 149.8 176 52.8
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 4.8e-34 149.1 170 51.8
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 6.3e-34 148.7 170 53.5
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 6.3e-34 148.7 176 52.8
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 6.3e-34 148.7 169 51.5
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 6.3e-34 148.7 170 52.9
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 8.2e-34 148.3 170 52.9
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 1.4e-33 147.5 170 50.6
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 1.8e-33 147.1 176 52.3
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.4e-33 146.7 169 50.9
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 2.4e-33 146.7 169 52.7
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 2.4e-33 146.7 169 52.1
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 2.4e-33 146.7 169 52.1
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 3.1e-33 146.4 171 52.0
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 4.1e-33 146.0 169 50.9
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 4.1e-33 146.0 169 50.9
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 4.1e-33 146.0 169 52.1
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 4.1e-33 146.0 170 52.4
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 5.3e-33 145.6 170 51.8
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 5.3e-33 145.6 170 51.8
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 6.9e-33 145.2 171 52.0
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 6.9e-33 145.2 171 52.0
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 9.0e-33 144.8 170 52.4
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 9.0e-33 144.8 169 50.9
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 9.0e-33 144.8 170 51.2
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 1.5e-32 144.1 169 50.3
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 1.5e-32 144.1 169 50.3
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 1.5e-32 144.1 170 50.6
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 2.0e-32 143.7 168 50.6
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 2.0e-32 143.7 170 50.6
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 2.6e-32 143.3 167 50.9
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 2.6e-32 143.3 169 51.5
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 2.6e-32 143.3 171 51.5
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 2.6e-32 143.3 170 50.0
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 3.4e-32 142.9 170 51.2
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 3.4e-32 142.9 170 50.6
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 3.4e-32 142.9 171 50.9
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 4.5e-32 142.5 185 48.6
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 4.5e-32 142.5 170 49.4
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 4.5e-32 142.5 181 49.2
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 4.5e-32 142.5 187 47.6
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 4.5e-32 142.5 169 49.7
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 5.9e-32 142.1 190 46.8
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 5.9e-32 142.1 169 52.1
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 7.6e-32 141.7 170 50.6
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 1.0e-31 141.4 168 50.6
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.3e-31 141.0 170 48.8
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 1.3e-31 141.0 170 50.0
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.3e-31 141.0 170 50.6
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 1.3e-31 141.0 168 51.2
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 1.7e-31 140.6 204 45.1
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 1.7e-31 140.6 181 48.1
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.7e-31 140.6 169 49.7
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.7e-31 140.6 169 49.7
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 1.7e-31 140.6 169 49.7
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 1.7e-31 140.6 168 51.8
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 2.2e-31 140.2 170 49.4
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 3.8e-31 139.4 181 47.5
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 3.8e-31 139.4 187 48.1
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 3.8e-31 139.4 181 47.5
Cc05_g12210 Coffea canephora HOM05D003356 ORTHO05D004362 3.8e-31 139.4 176 48.3
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 3.8e-31 139.4 176 48.9
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 6.5e-31 138.7 169 49.7
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 6.5e-31 138.7 184 47.3
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 8.5e-31 138.3 169 50.9
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 8.5e-31 138.3 204 44.6
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 1.1e-30 137.9 181 47.5
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 1.4e-30 137.5 171 49.1
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 1.4e-30 137.5 169 50.9
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.4e-30 137.5 169 50.9
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 1.4e-30 137.5 176 48.3
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 1.9e-30 137.1 172 48.8
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 1.9e-30 137.1 172 48.8
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 1.9e-30 137.1 170 48.8
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 1.9e-30 137.1 168 49.4
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 2.5e-30 136.7 171 49.1
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 2.5e-30 136.7 171 49.1
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 2.5e-30 136.7 171 49.1
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 2.5e-30 136.7 167 50.9
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 3.2e-30 136.3 172 48.3
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 3.2e-30 136.3 174 46.6
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 3.2e-30 136.3 171 48.5
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 4.2e-30 136.0 170 48.8
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 4.2e-30 136.0 169 50.3
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 5.5e-30 135.6 169 47.9
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 5.5e-30 135.6 167 50.3
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 7.2e-30 135.2 170 48.8
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 7.2e-30 135.2 169 50.3
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 9.3e-30 134.8 170 45.9
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 9.3e-30 134.8 167 48.5
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 1.2e-29 134.4 168 48.8
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.6e-29 134.0 169 49.7
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 2.1e-29 133.7 173 48.6
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 2.1e-29 133.7 173 48.6
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 2.1e-29 133.7 171 46.8
Actinidia18761 Actinidia chinensis HOM05D003356 ORTHO05D004362 2.7e-29 133.3 174 46.0
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 2.7e-29 133.3 167 47.3
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 2.7e-29 133.3 167 47.3
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 4.6e-29 132.5 170 47.6
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 6.1e-29 132.1 169 47.3
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 1.0e-28 131.3 170 47.1
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 1.3e-28 131.0 169 47.9
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.3e-28 130.2 141 51.1
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 5.1e-28 129.0 169 48.5
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 5.1e-28 129.0 167 47.9
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 2.5e-27 126.7 170 45.9
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 2.8e-26 123.2 167 44.9
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 3.7e-26 122.9 172 44.8
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 6.3e-26 122.1 167 44.9
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 8.2e-26 121.7 185 41.6
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 8.2e-26 121.7 169 43.2
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 1.1e-25 121.3 170 43.5
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 1.4e-25 120.9 168 43.5
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 3.1e-25 119.8 170 42.9
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 6.9e-25 118.6 169 42.6
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 6.9e-25 118.6 168 44.0
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 9.1e-25 118.2 168 42.3
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 2.0e-24 117.1 208 38.9
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 5.9e-24 115.5 167 43.1
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 3.8e-23 112.8 167 43.7
Lalb_Chr25g0286481 Lupinus albus HOM05D003356 ORTHO05D004362 5.0e-23 112.5 149 47.0
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 8.5e-23 111.7 169 43.2
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 4.2e-22 109.4 167 38.3
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 7.2e-22 108.6 231 34.6
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 7.9e-21 105.1 174 39.1
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 1.4e-20 104.4 168 38.7
ECA236G3466 Erigeron canadensis HOM05D003356 ORTHO05D004362 8.8e-20 101.7 177 37.3
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 1.3e-18 97.8 185 37.3
Dinv08305 Davidia involucrata HOM05D003356 ORTHO05D004362 4.8e-18 95.9 61 78.7
Sabra11G0105400 Salix brachista HOM05D003356 ORTHO05D030555 1.5e-16 90.9 61 72.1
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 3.4e-16 89.7 185 34.1
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 5.9e-16 89.0 61 70.5
HPP92_014741 Vanilla planifolia HOM05D003356 ORTHO05D004362 1.3e-15 87.8 207 33.3
Psat7g229040 Pisum sativum HOM05D003356 ORTHO05D004362 2.2e-15 87.0 52 84.6
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 5.5e-14 82.4 166 31.3
AL230U10050 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 6.1e-13 79.0 61 65.6
AL3G27910 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 6.1e-13 79.0 61 65.6
Dinv08306 Davidia involucrata HOM05D003356 ORTHO05D004362 8.8e-12 75.1 51 74.5
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 3.3e-11 73.2 166 30.1
HPP92_020871 Vanilla planifolia HOM05D003356 ORTHO05D004362 1.0e-07 61.6 47 63.8
arahy.Tifrunner.gnm1.ann1.71RN23 Arachis hypogaea HOM05D003356 ORTHO05D014021 3.8e-07 59.7 51 62.7
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 2.5e-06 57.0 169 26.6
arahy.Tifrunner.gnm1.ann1.7XQU0B Arachis hypogaea HOM05D003356 ORTHO05D083362 5.5e-06 55.8 51 60.8


User provided reference genes

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