Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 0.0e+00 1161.7 581 100.0
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.3e-300 1035.8 581 89.0
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.7e-289 998.8 576 85.6
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.2e-263 912.9 577 78.7
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 2.6e-261 905.2 569 78.4
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 5.6e-256 887.5 579 76.9
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 3.5e-242 841.6 631 68.8
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 7.8e-242 840.5 590 70.8
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 3.4e-237 825.1 580 68.4
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 8.4e-236 820.5 585 68.9
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 5.4e-235 817.8 581 69.5
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.3e-233 813.1 581 69.0
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.5e-232 808.9 611 65.8
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 5.6e-232 807.7 581 67.0
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.6e-231 806.2 581 68.8
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 6.2e-231 804.3 581 67.8
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.4e-230 803.1 580 68.3
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.1e-227 793.5 581 67.8
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 4.2e-227 791.6 581 65.9
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 9.3e-227 790.4 581 68.2
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.6e-226 789.6 581 65.7
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 3.9e-225 785.0 581 66.6
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.5e-224 783.1 581 65.9
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 3.3e-224 781.9 577 65.5
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.3e-224 781.9 581 65.4
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 3.3e-224 781.9 583 65.2
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 5.6e-224 781.2 583 65.5
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 1.6e-223 779.6 514 74.9
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 2.4e-222 775.8 577 66.6
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.5e-221 773.1 581 65.2
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 7.6e-221 770.8 581 64.9
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 7.6e-221 770.8 583 64.7
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.3e-220 770.0 581 65.4
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 3.8e-220 768.5 581 65.2
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.1e-219 766.9 581 64.5
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.4e-219 766.5 584 65.4
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.9e-219 766.1 540 67.4
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.2e-219 765.4 581 64.5
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.1e-218 762.7 581 65.1
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 4.6e-218 761.5 569 65.6
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.8e-217 759.6 599 62.9
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 9.6e-216 753.8 581 63.9
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 9.6e-216 753.8 579 63.6
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 8.1e-215 750.7 579 63.6
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.8e-214 749.6 581 64.0
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 4.0e-214 748.4 583 62.1
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.6e-213 745.7 581 63.3
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 3.4e-213 745.3 580 64.5
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 9.9e-213 743.8 580 62.8
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.3e-212 743.4 582 62.7
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 2.2e-212 742.7 542 64.9
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.9e-212 742.3 536 64.9
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 5.5e-211 738.0 587 62.0
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.2e-210 736.9 587 62.2
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.2e-210 736.9 561 64.2
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.6e-210 736.5 581 62.5
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 2.1e-210 736.1 565 63.7
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 2.7e-210 735.7 606 60.2
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.3e-209 733.4 617 64.5
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.5e-208 729.9 547 63.3
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 4.3e-208 728.4 623 59.2
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 7.4e-208 727.6 551 63.3
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 7.4e-208 727.6 514 68.1
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.1e-206 723.8 579 61.8
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 3.1e-206 722.2 570 61.9
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 7.6e-205 717.6 589 60.6
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 2.7e-202 709.1 581 61.8
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 3.7e-199 698.7 546 61.7
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.3e-198 694.9 569 61.0
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 9.0e-198 694.1 564 59.2
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.5e-197 693.3 661 54.8
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 2.5e-195 686.0 581 59.4
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 4.8e-191 671.8 579 56.8
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.2e-188 662.9 463 69.1
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 9.4e-187 657.5 580 56.6
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 7.4e-184 647.9 460 66.1
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 9.7e-184 647.5 462 66.0
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 2.8e-183 646.0 460 66.1
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 5.2e-177 625.2 460 65.2
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.2e-170 604.0 431 65.9
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 4.7e-170 602.1 462 63.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.0e-168 596.7 537 57.7
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 1.3e-167 594.0 510 61.6
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 3.7e-167 592.4 401 70.8
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 2.4e-166 589.7 527 57.1
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 8.5e-164 581.3 574 53.0
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.5e-163 579.7 463 62.4
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 4.7e-162 575.5 511 57.1
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.3e-156 557.4 573 48.7
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 5.7e-152 542.0 296 87.5
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 2.2e-151 540.0 572 48.1
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.5e-147 526.6 544 47.8
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.8e-145 520.4 582 47.6
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 4.0e-145 519.2 351 70.9
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.8e-136 488.8 394 60.9
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 8.6e-124 448.4 364 60.7
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.5e-123 447.6 270 80.7
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 3.0e-116 423.3 353 58.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 5.8e-112 409.1 540 43.7
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.2e-103 380.6 313 59.4
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 3.2e-102 376.7 267 67.8
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 1.0e-92 345.1 236 68.6
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.5e-91 340.5 721 33.7
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 5.6e-91 339.3 550 38.9
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 4.2e-86 323.2 251 60.2
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 7.9e-85 318.9 568 36.3
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 2.6e-80 303.9 191 77.0
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 6.3e-74 282.7 455 37.4
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.3e-66 258.5 513 35.9
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.6e-64 250.8 206 62.1
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.8e-58 230.7 523 32.7
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 6.5e-55 219.5 544 29.2
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 2.7e-53 214.2 145 67.6
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.7e-50 204.9 123 78.0
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 1.2e-48 198.7 398 35.9
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 2.4e-41 174.5 97 87.6
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 3.1e-28 131.0 132 51.5
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.2e-24 119.0 82 65.9
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.3e-23 115.5 583 25.6
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 3.9e-23 114.0 121 52.1
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.4e-20 105.5 118 45.8
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.8e-20 105.1 82 61.0
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 8.9e-20 102.8 110 50.0
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 7.5e-19 99.8 105 48.6
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 1.1e-17 95.9 126 45.2
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.9e-17 95.1 115 45.2
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.2e-17 94.4 118 44.1
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.1e-17 93.2 114 44.7
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 3.0e-15 87.8 57 63.2
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 2.5e-14 84.7 57 66.7
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.2e-09 67.8 46 69.6
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 5.4e-09 67.0 55 52.7
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 6.0e-08 63.5 47 63.8
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 6.6e-07 60.1 35 77.1
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.5e-06 58.2 38 68.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.5e-06 58.2 38 68.4
C08p31170 Brassica napus HOM05D035890 ORTHO05D033370 7.3e-06 56.6 42 64.3


User provided reference genes

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