Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 6.4e-70 267.3 137 100.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 9.3e-61 236.9 137 88.3
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 7.6e-55 217.2 167 72.5
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 1.2e-52 209.9 135 80.0
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 3.5e-52 208.4 137 78.1
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 1.0e-51 206.8 126 82.5
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 4.8e-49 198.0 128 76.6
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 2.7e-44 182.2 124 74.2
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 6.1e-44 181.0 134 69.4
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 6.1e-44 181.0 126 71.4
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 1.0e-43 180.3 124 73.4
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.4e-43 179.9 125 72.8
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 2.3e-43 179.1 171 57.9
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 5.1e-43 177.9 121 72.7
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 1.1e-42 176.8 126 69.0
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 1.1e-42 176.8 130 69.2
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 3.3e-42 175.3 124 68.5
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 5.7e-42 174.5 121 70.2
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 5.7e-42 174.5 120 70.0
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 5.7e-42 174.5 120 70.0
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 5.7e-42 174.5 124 68.5
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.8e-41 172.2 123 71.5
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 2.8e-41 172.2 124 70.2
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 4.8e-41 171.4 123 69.9
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 6.3e-41 171.0 121 70.2
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 6.3e-41 171.0 125 68.0
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 8.2e-41 170.6 123 70.7
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 1.8e-40 169.5 123 69.1
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 2.4e-40 169.1 134 64.9
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 3.1e-40 168.7 132 66.7
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 3.1e-40 168.7 128 69.5
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 5.3e-40 167.9 131 63.4
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 6.9e-40 167.5 121 68.6
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 9.1e-40 167.2 107 82.2
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 9.1e-40 167.2 124 65.3
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 9.1e-40 167.2 120 67.5
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 9.1e-40 167.2 126 65.9
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 1.2e-39 166.8 125 68.8
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 1.2e-39 166.8 124 65.3
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.5e-39 166.4 126 66.7
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 2.6e-39 165.6 129 62.8
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 2.6e-39 165.6 144 61.1
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 3.4e-39 165.2 126 65.9
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 4.5e-39 164.9 120 67.5
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 4.5e-39 164.9 122 68.9
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 5.9e-39 164.5 123 68.3
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 5.9e-39 164.5 126 65.9
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 7.7e-39 164.1 126 66.7
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 7.7e-39 164.1 128 64.8
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 7.7e-39 164.1 123 67.5
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.0e-38 163.7 128 63.3
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 1.3e-38 163.3 115 73.9
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.3e-38 163.3 123 65.0
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.7e-38 162.9 122 68.0
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 2.2e-38 162.5 125 62.4
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 2.9e-38 162.2 123 66.7
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 3.8e-38 161.8 122 68.0
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 5.0e-38 161.4 126 64.3
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 6.5e-38 161.0 121 65.3
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 1.9e-37 159.5 121 65.3
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 2.5e-37 159.1 132 60.6
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 2.5e-37 159.1 129 62.0
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 5.5e-37 157.9 128 61.7
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 7.2e-37 157.5 127 60.6
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 1.2e-36 156.8 126 64.3
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.6e-36 156.4 106 68.9
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 3.6e-36 155.2 123 61.8
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 7.9e-36 154.1 106 67.9
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 7.9e-36 154.1 120 65.0
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 1.8e-35 152.9 128 60.9
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 2.3e-35 152.5 121 61.2
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.3e-35 152.5 122 61.5
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-34 150.2 125 59.2
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.5e-34 149.8 134 56.7
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.5e-34 149.8 134 56.7
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.5e-34 149.8 134 56.7
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 2.0e-34 149.4 122 58.2
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 2.0e-34 149.4 100 74.0
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.6e-34 149.1 125 58.4
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 2.6e-34 149.1 126 60.3
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 4.4e-34 148.3 130 58.5
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 5.7e-34 147.9 124 59.7
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 5.7e-34 147.9 125 58.4
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 5.7e-34 147.9 134 57.5
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 5.7e-34 147.9 128 58.6
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 7.4e-34 147.5 125 57.6
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.3e-33 146.7 124 59.7
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 1.3e-33 146.7 124 54.0
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.7e-33 146.4 120 66.7
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 4.8e-33 144.8 125 56.8
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.1e-32 143.7 125 56.8
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 5.3e-32 141.4 156 51.9
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 4.5e-31 138.3 120 58.3
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 2.5e-29 132.5 120 52.5
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 2.7e-28 129.0 95 70.5
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 1.8e-27 126.3 105 64.8
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 2.6e-26 122.5 105 57.1
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 3.3e-26 122.1 117 51.3
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 5.7e-26 121.3 129 53.5
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 2.8e-25 119.0 118 49.2
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 4.8e-25 118.2 178 39.9
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 6.3e-25 117.9 96 63.5
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.4e-24 116.7 100 60.0
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 2.4e-24 115.9 99 58.6
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 7.0e-24 114.4 97 56.7
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 2.6e-23 112.5 104 56.7
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 4.5e-23 111.7 97 55.7
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 5.9e-23 111.3 93 62.4
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.3e-22 110.2 97 54.6
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 6.5e-22 107.8 96 56.2
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.2e-18 97.1 88 55.7
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 2.6e-18 95.9 106 41.5
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 2.8e-17 92.4 102 44.1
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.4e-16 90.1 99 48.5
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 5.3e-16 88.2 69 60.9
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 7.0e-16 87.8 77 54.5
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 1.6e-15 86.7 95 53.7
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 5.0e-14 81.6 92 47.8
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 7.2e-13 77.8 112 44.6
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 1.7e-09 66.6 110 29.1
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 1.6e-07 60.1 61 50.8


User provided reference genes

Program Settings