Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 9.3e-177 623.6 359 100.0
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 4.2e-121 438.7 309 79.0
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.6e-120 436.8 337 73.0
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 3.3e-118 429.1 347 68.6
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 4.8e-117 425.2 334 70.1
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.2e-112 410.6 316 69.6
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 8.0e-112 407.9 320 71.2
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 6.8e-111 404.8 318 71.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.0e-103 379.4 308 67.9
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.2e-102 377.5 313 65.2
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 5.7e-102 375.2 298 69.1
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 2.8e-101 372.9 317 66.2
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 6.3e-101 371.7 313 66.5
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 8.3e-101 371.3 296 67.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.4e-100 370.5 298 68.5
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.4e-100 370.5 317 63.7
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.8e-100 370.2 305 68.2
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.4e-100 369.8 298 66.4
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.1e-100 369.4 313 64.9
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.2e-99 367.5 310 64.8
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.7e-99 366.3 300 67.0
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 4.5e-99 365.5 309 63.8
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.3e-98 364.0 298 64.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.3e-98 363.2 298 66.8
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.3e-98 363.2 300 64.3
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.9e-98 362.5 296 67.2
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 5.0e-98 362.1 300 63.7
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.0e-98 362.1 293 67.6
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 6.6e-98 361.7 290 66.2
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.5e-97 360.5 317 64.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.9e-97 360.1 292 68.8
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 9.5e-97 357.8 302 65.6
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 9.5e-97 357.8 298 66.8
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 9.5e-97 357.8 298 65.1
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.2e-96 357.5 276 68.8
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.4e-95 354.0 319 61.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.8e-95 353.6 257 72.0
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 6.8e-95 351.7 300 66.0
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.8e-95 351.7 320 61.9
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.2e-94 350.9 292 66.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 2.0e-94 350.1 318 64.5
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 6.4e-93 345.1 303 63.4
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 6.4e-93 345.1 289 64.4
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.4e-92 344.0 294 65.6
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.4e-92 344.0 307 63.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.4e-92 344.0 301 60.8
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 7.0e-92 341.7 302 64.6
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.2e-91 340.9 299 64.2
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.0e-91 340.1 321 61.4
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.6e-91 339.0 296 62.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.0e-90 337.8 316 62.0
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.0e-90 337.8 314 62.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 3.9e-90 335.9 290 64.5
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 8.6e-90 334.7 252 74.2
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 9.5e-89 331.3 305 61.3
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.8e-88 329.7 250 68.0
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.6e-88 329.3 292 63.0
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.8e-87 327.0 336 58.9
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 4.0e-87 325.9 318 61.0
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 4.0e-87 325.9 299 62.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.2e-86 324.3 305 59.3
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.0e-86 323.6 300 62.3
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.5e-86 321.6 276 63.8
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.7e-85 319.3 219 72.6
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 8.3e-85 318.2 245 67.8
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.1e-84 317.8 287 62.0
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.4e-84 317.4 219 72.1
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.9e-84 317.0 247 68.0
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 2.4e-84 316.6 289 62.3
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.4e-84 316.6 266 66.9
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.4e-84 316.6 236 67.8
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.1e-84 315.8 319 58.9
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.2e-83 314.3 316 60.1
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.7e-83 313.2 329 55.6
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 3.5e-83 312.8 323 58.2
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.0e-82 311.2 323 57.9
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.3e-82 310.8 298 60.4
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.3e-82 310.8 305 56.4
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.3e-82 310.8 250 65.6
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.7e-82 310.5 298 60.4
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.3e-82 310.1 298 60.4
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 5.1e-82 308.9 327 57.5
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 1.9e-81 307.0 319 57.7
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 1.9e-81 307.0 319 57.7
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 3.3e-81 306.2 309 57.9
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.6e-81 305.4 347 52.4
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.1e-80 303.5 322 56.8
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 8.1e-80 301.6 302 57.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 8.1e-80 301.6 296 59.8
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 8.1e-80 301.6 244 69.7
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 4.0e-79 299.3 278 57.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 2.0e-78 297.0 268 63.1
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 4.4e-78 295.8 299 57.9
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 7.5e-78 295.0 290 60.7
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 4.9e-77 292.4 289 59.2
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 4.9e-77 292.4 304 56.9
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.4e-76 290.0 303 57.4
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.4e-76 290.0 303 57.4
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 7.1e-76 288.5 294 57.1
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.1e-76 288.5 303 57.1
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.1e-75 287.0 292 56.2
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.5e-75 286.2 259 59.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 3.0e-74 283.1 322 54.7
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 7.3e-73 278.5 302 53.3
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 3.6e-72 276.2 304 55.9
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.2e-70 271.2 325 53.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.3e-69 267.7 233 58.8
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.1e-68 264.6 266 54.9
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.2e-67 261.2 297 50.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.0e-66 258.1 309 54.4
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 7.6e-62 241.9 183 64.5
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 8.4e-61 238.4 280 48.9
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.9e-58 229.6 284 48.9
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 6.4e-53 212.2 134 78.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.2e-52 209.9 237 45.1
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 7.1e-52 208.8 268 49.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 9.3e-52 208.4 277 52.0
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 6.7e-42 175.6 151 63.6
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.7e-42 175.3 141 66.7
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.5e-41 174.5 124 66.1
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.1e-39 168.3 271 40.6
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.9e-37 160.2 281 39.1
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 6.1e-35 152.5 177 46.3
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.9e-33 147.5 95 76.8
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.9e-33 147.5 97 75.3
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-25 121.7 284 29.2
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.0e-21 108.6 148 48.6
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.3e-21 108.2 196 32.7
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.7e-21 107.8 168 42.3
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 2.9e-21 107.1 70 75.7
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 8.2e-16 89.0 140 41.4
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.6e-11 74.7 182 30.2
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.3e-10 70.9 191 27.2
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 8.8e-10 68.9 53 66.0
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.1e-09 68.6 217 26.3
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.8e-07 61.2 76 47.4
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 4.1e-07 60.1 228 25.4
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 2.0e-06 57.8 104 27.9


User provided reference genes

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