Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 0.0e+00 1189.5 633 100.0
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 0.0e+00 1119.8 628 94.6
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 0.0e+00 1107.8 633 93.5
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 0.0e+00 1082.0 631 92.1
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.2e-291 1005.4 633 81.5
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.8e-277 959.1 640 81.6
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 3.4e-276 954.9 634 79.3
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 2.9e-275 951.8 632 79.3
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 2.9e-275 951.8 638 78.2
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 5.4e-274 947.6 631 78.4
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 7.8e-273 943.7 633 78.2
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 4.3e-271 937.9 660 76.5
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 7.6e-268 927.2 641 76.3
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 5.0e-243 844.7 637 70.6
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.7e-241 839.0 645 70.1
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 7.9e-241 837.4 630 70.2
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.3e-240 835.9 637 71.3
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.3e-240 835.9 637 71.3
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 5.1e-240 834.7 639 70.0
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 2.5e-239 832.4 650 66.8
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-237 825.1 635 70.9
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.9e-237 824.3 635 70.9
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 6.9e-237 824.3 640 69.4
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.0e-236 822.8 640 69.2
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.0e-236 822.8 636 70.9
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.5e-236 821.6 636 70.8
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 2.9e-235 818.9 644 67.7
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.4e-234 816.6 650 68.2
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.2e-233 813.5 638 68.8
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.2e-233 813.5 642 68.5
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.7e-233 812.4 646 67.6
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 2.3e-232 809.3 647 68.0
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 5.7e-231 804.7 647 68.9
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.7e-230 803.1 639 68.7
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 4.8e-230 801.6 643 68.4
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 6.3e-230 801.2 638 66.9
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.1e-229 800.4 642 67.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.8e-229 799.7 637 67.8
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-228 797.0 637 67.3
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.2e-228 797.0 635 68.0
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 7.7e-228 794.3 638 67.6
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.7e-227 793.1 630 66.8
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.2e-227 792.7 656 66.0
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 3.8e-227 792.0 642 67.1
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.0e-227 791.6 638 67.4
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.9e-226 789.6 660 63.6
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.5e-226 789.3 642 67.6
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 9.4e-226 787.3 635 65.5
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.1e-225 784.6 646 65.2
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.4e-224 783.5 660 65.3
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.8e-224 783.1 637 65.6
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 3.0e-224 782.3 717 63.2
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 2.6e-223 779.2 635 67.9
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.6e-223 779.2 676 62.9
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.4e-223 778.5 641 67.2
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 8.2e-222 774.2 674 63.8
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.4e-221 773.5 648 68.1
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.1e-221 772.3 636 67.1
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 7.0e-221 771.2 648 67.9
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.0e-219 767.3 653 63.6
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 4.2e-218 761.9 665 60.8
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 4.7e-217 758.4 636 65.3
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 6.1e-217 758.1 644 65.7
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 1.5e-215 753.4 654 63.1
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 5.7e-215 751.5 643 65.5
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 7.4e-215 751.1 729 56.7
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 2.8e-214 749.2 643 65.5
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 8.2e-214 747.7 679 60.5
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.1e-213 745.7 631 66.9
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.1e-213 745.3 666 61.3
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 4.1e-213 745.3 638 67.1
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.5e-212 742.3 576 70.1
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.0e-211 740.7 647 61.2
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.7e-211 740.0 686 61.8
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 3.8e-211 738.8 646 63.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 6.5e-211 738.0 643 64.4
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.2e-209 733.8 655 60.6
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.1e-209 733.0 667 60.7
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.0e-208 730.7 655 60.5
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 5.2e-208 728.4 643 63.0
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 3.4e-207 725.7 650 62.6
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 4.4e-207 725.3 643 63.8
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 5.7e-207 724.9 744 57.3
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.7e-206 723.4 638 62.9
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 2.8e-206 722.6 643 63.5
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.4e-205 720.3 645 61.6
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 1.2e-204 717.2 639 62.3
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.6e-204 716.8 666 59.5
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 5.9e-204 714.9 637 62.2
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 2.9e-203 712.6 637 62.3
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 4.2e-202 708.8 644 63.4
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 7.2e-202 708.0 637 61.9
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.2e-201 707.2 639 63.5
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.0e-200 704.1 637 62.2
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 5.2e-200 701.8 640 60.8
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 2.7e-196 689.5 638 57.2
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 4.5e-196 688.7 648 60.0
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 8.9e-192 674.5 639 60.7
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 4.4e-191 672.2 648 60.8
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 9.8e-183 644.4 603 59.2
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 9.8e-183 644.4 641 56.5
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 5.4e-181 638.6 682 55.0
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 2.8e-177 626.3 670 53.9
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 8.1e-177 624.8 688 54.2
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.2e-175 620.9 569 63.1
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 6.0e-172 608.6 610 57.4
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.3e-170 602.4 560 61.6
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.6e-169 600.5 637 55.1
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.0e-168 595.9 440 69.8
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 4.7e-161 572.4 665 50.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 9.3e-149 531.6 652 51.5
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.2e-148 531.2 454 64.5
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.7e-148 530.0 659 49.5
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.9e-147 526.2 647 50.7
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.3e-142 511.1 654 50.2
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 9.6e-138 495.0 648 49.4
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.4e-127 459.9 536 50.6
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 4.5e-127 459.5 439 56.5
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 4.3e-114 416.4 653 42.4
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.7e-106 389.4 380 59.5
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 4.1e-96 356.7 222 79.3
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 6.5e-94 349.4 241 73.4
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.5e-93 347.4 225 75.6
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 5.2e-91 339.7 382 55.0
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.7e-89 333.6 189 85.7
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 4.1e-72 276.9 761 31.4
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.3e-70 271.9 329 49.8
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-66 258.8 261 55.2
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 6.4e-65 253.1 190 67.9
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 7.8e-63 246.1 734 31.5
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 3.0e-62 244.2 379 42.2
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-58 232.3 241 55.2
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 2.7e-55 221.1 706 29.6
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 4.4e-50 203.8 117 82.1
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 3.5e-47 194.1 373 37.3
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.3e-40 169.5 98 84.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-38 164.5 90 85.6
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-37 162.5 242 43.0
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.2e-34 152.5 242 43.0
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-32 145.2 82 86.6
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.6e-31 140.6 116 63.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.9e-31 139.8 82 80.5
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-30 139.4 84 82.1
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-27 129.4 167 49.7
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 3.1e-27 127.9 93 71.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.2e-26 125.9 158 46.2
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.4e-26 124.4 111 61.3
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-26 124.4 104 64.4
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.5e-26 124.0 66 84.8
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 6.4e-25 120.2 142 50.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.1e-23 115.2 70 78.6
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 1.8e-22 112.1 82 70.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.0e-22 111.3 61 85.2
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.7e-22 110.2 60 85.0
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.7e-22 110.2 61 83.6
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 6.5e-17 93.6 109 53.2
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.6e-15 89.0 111 51.4
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.6e-15 87.4 43 100.0
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 5.7e-13 80.5 122 48.4
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 9.7e-13 79.7 208 33.2
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-12 77.4 60 66.7
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.8e-11 75.5 194 31.4
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 4.1e-11 74.3 43 81.4
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 5.0e-09 67.4 58 56.9
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.5e-09 66.6 38 73.7
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 5.5e-08 63.9 41 70.7
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-07 62.0 40 65.0
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 2.7e-07 61.6 141 37.6
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.1e-07 60.5 33 84.8
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.1e-07 60.5 32 87.5
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.3e-06 58.5 33 81.8
Lsat_1_v5_gn_3_135720 Lactuca sativa HOM05D004098 ORTHO05D005215 5.1e-06 57.4 44 68.2
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 5.1e-06 57.4 33 78.8


User provided reference genes

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