Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 2.9e-137 491.9 250 100.0
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 5.2e-126 454.5 251 91.2
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 2.0e-117 426.0 251 86.5
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 7.0e-115 417.5 257 84.8
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 5.6e-104 381.3 257 75.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 2.3e-102 375.9 250 75.6
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 5.2e-102 374.8 257 74.7
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 6.6e-97 357.8 241 76.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 5.6e-96 354.8 211 82.5
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.2e-95 353.6 211 82.0
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.4e-94 350.1 230 79.1
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.4e-94 350.1 217 79.3
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 3.1e-94 349.0 230 78.7
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 3.1e-94 349.0 249 71.5
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 5.2e-94 348.2 249 71.1
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 6.8e-94 347.8 239 74.1
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 3.8e-92 342.0 242 72.3
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.1e-91 340.5 213 78.9
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 1.4e-91 340.1 245 70.6
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.9e-91 339.7 213 77.5
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.4e-91 338.2 246 70.3
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 9.2e-91 337.4 236 72.5
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 9.2e-91 337.4 227 74.4
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.2e-90 337.0 247 71.3
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.2e-90 337.0 237 71.7
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 1.6e-90 336.7 237 70.9
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.6e-90 336.7 239 72.4
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 2.1e-90 336.3 217 75.1
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 3.5e-90 335.5 226 74.8
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 3.5e-90 335.5 240 70.8
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 4.6e-90 335.1 246 70.7
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 6.0e-90 334.7 213 77.0
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.3e-89 333.6 245 70.6
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 1.7e-89 333.2 213 77.0
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 2.3e-89 332.8 220 75.9
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 5.1e-89 331.6 214 77.6
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 8.6e-89 330.9 214 76.6
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.5e-88 330.1 232 72.0
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 4.3e-88 328.6 212 76.9
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.6e-87 326.6 243 70.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 2.1e-87 326.2 257 68.9
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 2.8e-87 325.9 257 67.3
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 4.7e-87 325.1 249 67.1
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 4.7e-87 325.1 211 75.4
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 6.2e-87 324.7 216 74.1
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 8.1e-87 324.3 214 74.3
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.4e-86 323.6 214 76.6
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.4e-86 323.6 215 75.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 1.8e-86 323.2 214 74.8
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.8e-86 323.2 237 67.5
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 2.4e-86 322.8 215 74.9
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 2.4e-86 322.8 215 74.9
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 3.1e-86 322.4 213 74.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 4.0e-86 322.0 237 69.6
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.2e-85 320.5 233 71.7
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.2e-85 320.5 237 67.1
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.2e-85 320.5 217 72.4
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.5e-85 320.1 241 66.0
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.0e-85 319.7 212 74.1
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 2.6e-85 319.3 221 74.7
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.6e-85 319.3 215 73.5
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 3.4e-85 318.9 212 73.1
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 3.4e-85 318.9 205 75.6
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.3e-84 317.0 226 72.1
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.7e-84 316.6 225 69.8
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.7e-84 316.6 213 73.7
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.7e-84 316.6 213 74.6
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 1.7e-84 316.6 213 74.2
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.2e-84 316.2 213 73.7
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 4.9e-84 315.1 215 72.1
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 4.9e-84 315.1 213 72.3
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 6.4e-84 314.7 202 77.7
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.4e-83 313.5 212 74.5
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.4e-83 313.5 245 66.9
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.4e-83 313.5 188 80.3
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.9e-83 313.2 211 72.0
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 2.4e-83 312.8 179 83.8
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 5.4e-83 311.6 229 71.2
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 5.4e-83 311.6 229 71.2
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 7.1e-83 311.2 235 68.1
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.3e-83 310.8 213 73.2
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 2.1e-82 309.7 225 70.2
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 3.5e-82 308.9 242 68.6
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 3.5e-82 308.9 247 66.4
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.0e-81 307.4 248 65.3
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.3e-81 307.0 229 70.3
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.7e-81 306.6 226 69.9
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 2.3e-81 306.2 231 68.0
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 2.3e-81 306.2 216 72.2
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 3.0e-81 305.8 187 78.6
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 3.9e-81 305.4 256 64.8
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 6.6e-81 304.7 210 68.6
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 1.9e-80 303.1 244 65.2
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.9e-80 303.1 205 74.1
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 7.3e-80 301.2 250 66.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 7.3e-80 301.2 215 70.7
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.6e-79 300.1 247 66.4
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 2.1e-79 299.7 221 67.9
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 4.8e-79 298.5 206 68.9
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 6.2e-79 298.1 204 73.0
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.4e-78 297.0 178 80.3
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.2e-77 293.9 217 68.7
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.2e-76 289.7 211 69.7
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 4.9e-76 288.5 211 68.7
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.2e-75 285.8 213 68.1
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.1e-74 283.1 210 64.8
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 3.3e-72 275.8 216 63.4
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.3e-68 263.8 208 59.6
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 2.1e-66 256.5 179 68.7
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 2.1e-63 246.5 183 67.8
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 7.1e-59 231.5 179 59.2
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 3.0e-57 226.1 195 54.4
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 7.4e-48 194.9 134 69.4
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.3e-46 188.7 149 63.1
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 7.7e-45 184.9 111 82.0
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.1e-43 181.0 245 40.8
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 4.8e-39 165.6 180 46.7
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.9e-27 127.1 96 64.6
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 4.4e-24 115.9 170 37.6
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.5e-19 100.9 75 69.3
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.4e-16 89.7 54 75.9
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 3.2e-11 73.2 60 60.0
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 4.4e-08 62.8 231 26.0
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 9.8e-08 61.6 198 28.3
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 9.8e-08 61.6 199 26.1
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.7e-07 60.8 211 25.1
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 2.8e-07 60.1 191 25.7
HanXRQChr07g0200961 Helianthus annuus HOM05D002933 ORTHO05D009221 3.7e-07 59.7 203 26.6
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 3.7e-07 59.7 203 27.1
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 3.7e-07 59.7 228 23.7
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 3.7e-07 59.7 178 25.8
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 4.9e-07 59.3 240 26.7
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 4.9e-07 59.3 233 26.6
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 4.9e-07 59.3 228 23.7
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 4.9e-07 59.3 262 22.9
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 8.3e-07 58.5 231 25.1
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 8.3e-07 58.5 180 25.6
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 1.1e-06 58.2 182 24.7
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 1.1e-06 58.2 199 28.1
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.1e-06 58.2 178 26.4
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.8e-06 57.4 127 28.3
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.8e-06 57.4 127 28.3
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.8e-06 57.4 127 28.3
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 1.8e-06 57.4 180 25.0
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 1.8e-06 57.4 233 24.9
Thecc.10G052300 Theobroma cacao HOM05D002933 ORTHO05D009221 1.8e-06 57.4 200 25.0
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 2.4e-06 57.0 180 25.6
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 2.4e-06 57.0 231 23.8
Sed0025549 Sechium edule HOM05D002933 ORTHO05D009221 3.1e-06 56.6 194 23.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 4.1e-06 56.2 127 27.6
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 4.1e-06 56.2 177 26.0
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 4.1e-06 56.2 180 25.6
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 4.1e-06 56.2 195 24.6
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 4.1e-06 56.2 127 29.1
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 5.4e-06 55.8 209 23.9
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 5.4e-06 55.8 236 22.0
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 7.0e-06 55.5 150 28.7
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 7.0e-06 55.5 127 27.6
Hma1.2p1_0402F.1_g144930 Hydrangea macrophylla HOM05D002933 ORTHO05D009221 7.0e-06 55.5 207 26.1
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 7.0e-06 55.5 193 25.4
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 7.0e-06 55.5 182 26.4
Migut.F01519 Erythranthe guttata HOM05D002933 ORTHO05D009221 9.2e-06 55.1 233 22.7
FAN06G0750 Fragaria x ananassa HOM05D002933 ORTHO05D009221 9.2e-06 55.1 180 26.7


User provided reference genes

Program Settings