Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 3.0e-63 245.0 122 100.0
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.3e-42 176.4 100 81.0
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 9.5e-41 170.2 98 78.6
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 9.5e-41 170.2 98 78.6
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.1e-40 169.1 100 77.0
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 2.8e-40 168.7 100 76.0
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 3.6e-40 168.3 100 76.0
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.6e-40 168.3 99 76.8
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 1.1e-39 166.8 98 76.5
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-39 166.4 100 76.0
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.8e-39 166.0 98 76.5
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.8e-39 166.0 98 76.5
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 2.3e-39 165.6 95 77.9
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.1e-39 165.2 98 77.6
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.1e-39 165.2 98 77.6
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 4.0e-39 164.9 99 73.7
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 5.2e-39 164.5 96 76.0
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 5.2e-39 164.5 98 75.5
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 6.8e-39 164.1 98 75.5
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 8.9e-39 163.7 98 72.4
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 8.9e-39 163.7 96 75.0
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 8.9e-39 163.7 98 75.5
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.2e-38 163.3 100 75.0
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.5e-38 162.9 100 74.0
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.5e-38 162.9 100 74.0
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.5e-38 162.9 98 74.5
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 2.0e-38 162.5 99 72.7
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 2.6e-38 162.2 98 75.5
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.6e-38 162.2 96 75.0
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 3.4e-38 161.8 97 74.2
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 4.4e-38 161.4 98 73.5
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 5.8e-38 161.0 98 73.5
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 5.8e-38 161.0 98 72.4
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 5.8e-38 161.0 98 73.5
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 5.8e-38 161.0 98 73.5
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.9e-37 158.7 97 73.2
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 3.7e-37 158.3 98 71.4
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 3.7e-37 158.3 98 71.4
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 3.7e-37 158.3 98 70.4
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 6.4e-37 157.5 98 72.4
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 8.3e-37 157.1 98 70.4
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 8.3e-37 157.1 100 73.0
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 8.3e-37 157.1 98 72.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.4e-36 156.4 98 70.4
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 1.4e-36 156.4 80 92.5
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 2.4e-36 155.6 98 71.4
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 3.2e-36 155.2 93 76.3
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 5.4e-36 154.5 98 69.4
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 5.4e-36 154.5 98 69.4
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 5.4e-36 154.5 98 71.4
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 5.4e-36 154.5 98 71.4
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 5.4e-36 154.5 98 71.4
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 7.1e-36 154.1 99 67.7
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 9.2e-36 153.7 98 69.4
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 9.2e-36 153.7 98 69.4
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 1.6e-35 152.9 98 71.4
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.6e-35 152.9 98 70.4
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 2.1e-35 152.5 92 70.7
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 2.1e-35 152.5 98 67.3
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 2.1e-35 152.5 98 68.4
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 2.1e-35 152.5 98 71.4
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 2.1e-35 152.5 100 69.0
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 2.1e-35 152.5 90 75.6
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 2.1e-35 152.5 98 69.4
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.7e-35 152.1 92 76.1
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 3.5e-35 151.8 92 73.9
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 3.5e-35 151.8 98 68.4
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 3.5e-35 151.8 98 70.4
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 4.6e-35 151.4 98 70.4
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 4.6e-35 151.4 98 70.4
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 4.6e-35 151.4 98 70.4
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 6.0e-35 151.0 98 66.3
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 6.0e-35 151.0 98 69.4
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 7.8e-35 150.6 98 69.4
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 7.8e-35 150.6 98 69.4
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 7.8e-35 150.6 97 68.0
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 7.8e-35 150.6 97 68.0
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 1.0e-34 150.2 97 68.0
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.0e-34 150.2 98 69.4
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.3e-34 149.8 97 69.1
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.3e-34 149.8 98 68.4
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.7e-34 149.4 98 69.4
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 1.7e-34 149.4 97 69.1
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.7e-34 149.4 98 69.4
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.0e-34 148.7 97 68.0
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 3.0e-34 148.7 98 69.4
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 3.0e-34 148.7 97 69.1
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 3.0e-34 148.7 98 69.4
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 3.0e-34 148.7 98 67.3
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.9e-34 148.3 98 68.4
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 5.1e-34 147.9 97 68.0
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 6.6e-34 147.5 97 67.0
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 6.6e-34 147.5 95 68.4
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 6.6e-34 147.5 95 68.4
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 6.6e-34 147.5 95 68.4
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 6.6e-34 147.5 98 67.3
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 8.6e-34 147.1 97 67.0
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 1.1e-33 146.7 97 68.0
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 1.1e-33 146.7 97 68.0
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 1.1e-33 146.7 97 68.0
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 1.1e-33 146.7 97 68.0
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 1.1e-33 146.7 97 68.0
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.1e-33 146.7 98 67.3
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.5e-33 146.4 98 66.3
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 1.9e-33 146.0 98 67.3
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.9e-33 146.0 95 67.4
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.9e-33 146.0 95 67.4
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 2.5e-33 145.6 98 68.4
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 7.3e-33 144.1 98 66.3
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 6.2e-32 141.0 92 68.5
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 6.2e-32 141.0 98 66.3
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 6.2e-32 141.0 98 66.3
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 8.1e-32 140.6 92 67.4
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.1e-31 140.2 98 66.3
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 2.4e-31 139.0 96 65.6
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 4.0e-31 138.3 94 66.0
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 5.2e-31 137.9 98 62.2
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 6.4e-29 131.0 93 62.4
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 6.4e-29 131.0 93 62.4
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 8.4e-29 130.6 93 62.4
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 4.6e-27 124.8 122 51.6
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.5e-25 119.8 92 59.8
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.1e-24 115.9 72 68.1
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 8.1e-24 114.0 98 50.0
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 1.4e-23 113.2 74 70.3
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.0e-22 109.4 60 76.7
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 9.9e-22 107.1 100 54.0
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 7.1e-20 100.9 70 65.7
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.1e-19 99.4 62 66.1
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.0e-18 97.1 71 62.0
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.3e-18 96.7 89 55.1
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.7e-18 96.3 59 67.8
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 2.5e-17 92.4 80 58.8
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 2.1e-16 89.4 98 48.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 2.4e-15 85.9 53 73.6
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.3e-13 80.1 74 54.1
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 2.9e-13 79.0 59 61.0
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 6.4e-13 77.8 47 78.7
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 8.4e-13 77.4 80 50.0
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.1e-12 77.0 93 41.9
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 7.9e-11 70.9 81 46.9
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.3e-10 70.1 72 47.2
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 2.3e-10 69.3 73 49.3
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 3.9e-10 68.6 58 55.2
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 4.0e-07 58.5 40 65.0


User provided reference genes

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