Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G158 Trifolium pratense HOM05D000324 ORTHO05D004875 2.9e-114 415.2 206 100.0
Ca_16424_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 1.1e-62 243.8 162 77.2
Medtr3g084450 Medicago truncatula HOM05D000324 ORTHO05D004875 2.2e-61 239.6 161 77.6
Psat5g099440 Pisum sativum HOM05D000324 ORTHO05D004875 2.0e-59 233.0 161 75.2
Medtr3g084470 Medicago truncatula HOM05D000324 ORTHO05D004875 1.8e-52 209.9 162 69.8
Glyma.11G254100 Glycine max HOM05D000324 ORTHO05D004875 1.6e-48 196.8 155 68.4
arahy.Tifrunner.gnm1.ann1.8EJC90 Arachis hypogaea HOM05D000324 ORTHO05D004875 6.1e-48 194.9 145 67.6
Lj4g0014913 Lotus japonicus HOM05D000324 ORTHO05D004875 6.1e-48 194.9 168 60.1
TPR.G28942 Trifolium pratense HOM05D000324 ORTHO05D004875 1.0e-47 194.1 136 71.3
VMungo1383G3515 Vigna mungo HOM05D000324 ORTHO05D004875 3.0e-47 192.6 154 65.6
Phvul.001G265700 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 4.4e-46 188.7 154 64.3
arahy.Tifrunner.gnm1.ann1.II2GNC Arachis hypogaea HOM05D000324 ORTHO05D004875 1.3e-45 187.2 150 64.7
Lalb_Chr11g0075861 Lupinus albus HOM05D000324 ORTHO05D004875 1.4e-44 183.7 135 61.5
Glyma.05G151200 Glycine max HOM05D000324 ORTHO05D004875 3.1e-44 182.6 163 60.7
RcHm_v2.0_Chr4g0412911 Rosa chinensis HOM05D000324 ORTHO05D004875 9.1e-44 181.0 121 69.4
COL.COLO4_05433 Corchorus olitorius HOM05D000324 ORTHO05D004875 2.0e-43 179.9 117 71.8
Phvul.003G051300 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.7e-43 179.5 153 60.1
FvH4_4g13140 Fragaria vesca HOM05D000324 ORTHO05D004875 5.9e-43 178.3 120 68.3
FAN12G0788 Fragaria x ananassa HOM05D000324 ORTHO05D004875 5.9e-43 178.3 120 68.3
FAN17G1435 Fragaria x ananassa HOM05D000324 ORTHO05D004875 5.9e-43 178.3 120 67.5
Prupe.1G168200 Prunus persica HOM05D000324 ORTHO05D004875 5.9e-43 178.3 115 72.2
Prupe.1G167500 Prunus persica HOM05D000324 ORTHO05D004875 7.7e-43 177.9 184 50.0
Gohir.D05G325350 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.3e-42 177.2 151 58.9
Hma1.2p1_0806F.1_g221370 Hydrangea macrophylla HOM05D000324 ORTHO05D004875 1.7e-42 176.8 164 54.9
COL.COLO4_05432 Corchorus olitorius HOM05D000324 ORTHO05D004875 2.9e-42 176.0 120 69.2
MD04G1018900 Malus domestica HOM05D000324 ORTHO05D004875 8.5e-42 174.5 115 68.7
GSVIVG01022434001 Vitis vinifera HOM05D000324 ORTHO05D004875 8.5e-42 174.5 163 55.2
Atru.chr4.1549 Acer truncatum HOM05D000324 ORTHO05D004875 1.1e-41 174.1 129 66.7
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 1.5e-41 173.7 116 70.7
Solyc09g092450.3 Solanum lycopersicum HOM05D000324 ORTHO05D004875 2.5e-41 172.9 114 70.2
Sopen09g035350 Solanum pennellii HOM05D000324 ORTHO05D004875 2.5e-41 172.9 114 70.2
Gorai.011G152500 Gossypium raimondii HOM05D000324 ORTHO05D004875 3.2e-41 172.6 172 52.3
RcHm_v2.0_Chr4g0413021 Rosa chinensis HOM05D000324 ORTHO05D004875 3.2e-41 172.6 121 66.1
THA.LOC104808688 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 4.2e-41 172.2 123 69.1
Duzib268G1033 Durio zibethinus HOM05D000324 ORTHO05D004875 7.2e-41 171.4 121 67.8
FAN07G0429 Fragaria x ananassa HOM05D000324 ORTHO05D004875 7.2e-41 171.4 120 66.7
Gohir.D10G137300 Gossypium hirsutum HOM05D000324 ORTHO05D004875 7.2e-41 171.4 158 55.1
Duzib212G0095 Durio zibethinus HOM05D000324 ORTHO05D004875 9.4e-41 171.0 164 53.0
Gohir.A10G128800 Gossypium hirsutum HOM05D000324 ORTHO05D004875 9.4e-41 171.0 114 70.2
Medtr8g083170 Medicago truncatula HOM05D000324 ORTHO05D004875 9.4e-41 171.0 160 57.5
Nitab4.5_0000037g0030 Nicotiana tabacum HOM05D000324 ORTHO05D004875 9.4e-41 171.0 113 69.9
Gohir.A05G322700 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.2e-40 170.6 151 57.0
Actinidia35826 Actinidia chinensis HOM05D000324 ORTHO05D004875 2.1e-40 169.9 115 68.7
CiPaw.01G115100 Carya illinoinensis HOM05D000324 ORTHO05D004875 2.1e-40 169.9 162 52.5
Cfa008641 Carpinus fangiana HOM05D000324 ORTHO05D004875 3.6e-40 169.1 113 67.3
Potri.017G060100 Populus trichocarpa HOM05D000324 ORTHO05D004875 3.6e-40 169.1 169 50.9
TWI09G0239 Tripterygium wilfordii HOM05D000324 ORTHO05D004875 3.6e-40 169.1 121 65.3
PGR083G2335 Punica granatum HOM05D000324 ORTHO05D004875 4.7e-40 168.7 114 66.7
Rhsim09G0031500 Rhododendron simsii HOM05D000324 ORTHO05D004875 4.7e-40 168.7 106 74.5
TPR.G11871 Trifolium pratense HOM05D000324 ORTHO05D004875 4.7e-40 168.7 131 65.6
TAR362G1108 Trochodendron aralioides HOM05D000324 ORTHO05D004875 4.7e-40 168.7 114 70.2
Oeu050714.1 Olea europaea HOM05D000324 ORTHO05D004875 8.0e-40 167.9 102 73.5
ClCG06G003220 Citrullus lanatus HOM05D000324 ORTHO05D004875 1.0e-39 167.5 158 53.2
Thecc.04G193200 Theobroma cacao HOM05D000324 ORTHO05D004875 1.0e-39 167.5 148 59.5
CsaV3_6G001070 Cucumis sativus L. HOM05D000324 ORTHO05D004875 1.4e-39 167.2 114 66.7
Cc03_g09380 Coffea canephora HOM05D000324 ORTHO05D004875 1.8e-39 166.8 145 58.6
Peaxi162Scf00286g01036 Petunia axillaris HOM05D000324 ORTHO05D004875 1.8e-39 166.8 114 67.5
Potri.001G321800 Populus trichocarpa HOM05D000324 ORTHO05D004875 2.3e-39 166.4 182 49.5
SGA_v2.0_scaffold19G08786 Striga asiatica HOM05D000324 ORTHO05D004875 2.3e-39 166.4 153 56.2
CSS0006110 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D004875 4.0e-39 165.6 123 63.4
Dinv18404 Davidia involucrata HOM05D000324 ORTHO05D004875 4.0e-39 165.6 135 60.7
MD04G1018700 Malus domestica HOM05D000324 ORTHO05D004875 4.0e-39 165.6 121 66.1
FvH4_4g13151 Fragaria vesca HOM05D000324 ORTHO05D004875 5.2e-39 165.2 125 61.6
Lj3C353G5 Lonicera japonica HOM05D000324 ORTHO05D004875 5.2e-39 165.2 145 58.6
SalBow8G4028 Salvia bowleyana HOM05D001020 ORTHO05D004875 6.8e-39 164.9 136 62.5
Actinidia20854 Actinidia chinensis HOM05D000324 ORTHO05D004875 8.8e-39 164.5 115 66.1
CAN.G1155.12 Capsicum annuum HOM05D000324 ORTHO05D004875 1.2e-38 164.1 113 68.1
Ciclev10004427m.g Citrus clementina HOM05D000324 ORTHO05D004875 1.2e-38 164.1 142 56.3
Manes.05G201400 Manihot esculenta HOM05D000324 ORTHO05D004875 1.5e-38 163.7 153 52.9
Psat7g076000 Pisum sativum HOM05D000324 ORTHO05D004875 2.6e-38 162.9 127 63.0
THA.LOC104804788 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 2.6e-38 162.9 153 53.6
vmacro00432 Vaccinium macrocarpon HOM05D000324 ORTHO05D004875 2.6e-38 162.9 110 68.2
AL7G42350 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 4.4e-38 162.2 154 55.2
AT4G14070 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 4.4e-38 162.2 115 67.8
Lsat_1_v5_gn_1_70301 Lactuca sativa HOM05D000324 ORTHO05D004875 4.4e-38 162.2 114 64.0
Manes.01G056450 Manihot esculenta HOM05D000324 ORTHO05D004875 4.4e-38 162.2 109 67.0
MELO3C021161.2 Cucumis melo HOM05D000324 ORTHO05D004875 5.7e-38 161.8 115 62.6
RcHm_v2.0_Chr4g0413231 Rosa chinensis HOM05D000324 ORTHO05D004875 5.7e-38 161.8 159 51.6
VMungo0251G3101 Vigna mungo HOM05D000324 ORTHO05D004875 7.5e-38 161.4 153 55.6
Lalb_Chr13g0294751 Lupinus albus HOM05D000324 ORTHO05D004875 9.8e-38 161.0 207 46.9
A04p08090 Brassica napus HOM05D000324 ORTHO05D004875 2.8e-37 159.5 117 61.5
Sabra17G0054000 Salix brachista HOM05D000324 ORTHO05D004875 2.8e-37 159.5 122 59.8
Lsat_1_v5_gn_1_70360 Lactuca sativa HOM05D000324 ORTHO05D004875 3.7e-37 159.1 114 62.3
CANSAT78G1272 Cannabis sativa HOM05D000324 ORTHO05D004875 4.8e-37 158.7 102 68.6
BraA04t16497Z Brassica rapa HOM05D000324 ORTHO05D004875 6.3e-37 158.3 117 60.7
Sc13g0000480 Simmondsia chinensis HOM05D000324 ORTHO05D004875 6.3e-37 158.3 114 61.4
BcaC01g03365 Brassica carinata HOM05D000324 ORTHO05D004875 8.3e-37 157.9 172 50.6
CARHR099770 Cardamine hirsuta HOM05D000324 ORTHO05D004875 1.1e-36 157.5 151 57.0
Sed0014440 Sechium edule HOM05D000324 ORTHO05D004875 1.4e-36 157.1 121 60.3
Cpa.g.sc157.33 Carica papaya HOM05D000324 ORTHO05D004875 1.8e-36 156.8 119 63.9
Eucgr.H02649 Eucalyptus grandis HOM05D000324 ORTHO05D004875 1.8e-36 156.8 114 61.4
BcaC02g09362 Brassica carinata HOM05D000324 ORTHO05D004875 2.4e-36 156.4 117 61.5
BolC4t25753H Brassica oleracea HOM05D000324 ORTHO05D004875 2.4e-36 156.4 117 61.5
Sp3g21490 Schrenkiella parvula HOM05D000324 ORTHO05D004875 2.4e-36 156.4 168 50.0
Aa31LG8G10350 Aethionema arabicum HOM05D000324 ORTHO05D004875 3.1e-36 156.0 150 54.7
C04p41750 Brassica napus HOM05D000324 ORTHO05D004875 3.1e-36 156.0 117 60.7
DCAR_026665 Daucus carota HOM05D000324 ORTHO05D004875 3.1e-36 156.0 115 62.6
Nn1g08146 Nelumbo nucifera HOM05D000324 ORTHO05D004875 4.1e-36 155.6 113 61.9
AL3G38770 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 5.4e-36 155.2 150 54.0
CARHR220060 Cardamine hirsuta HOM05D000324 ORTHO05D004875 5.4e-36 155.2 115 63.5
Lsat_1_v5_gn_1_70400 Lactuca sativa HOM05D000324 ORTHO05D004875 5.4e-36 155.2 116 60.3
BcaB02g08635 Brassica carinata HOM05D000324 ORTHO05D004875 7.0e-36 154.8 117 61.5
C03p53280 Brassica napus HOM05D000324 ORTHO05D004875 7.0e-36 154.8 164 50.0
BolC3t17589H Brassica oleracea HOM05D000324 ORTHO05D004875 7.0e-36 154.8 164 50.0
HanXRQChr01g0022111 Helianthus annuus HOM05D000324 ORTHO05D004875 9.1e-36 154.5 130 57.7
Migut.G00782 Erythranthe guttata HOM05D000324 ORTHO05D004875 1.2e-35 154.1 160 51.2
AT3G23790 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 1.6e-35 153.7 150 53.3
Carub.0007s2836 Capsella rubella HOM05D000324 ORTHO05D004875 1.6e-35 153.7 115 63.5
MBI07_g15662_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D004875 1.6e-35 153.7 104 65.4
Sp7g11870 Schrenkiella parvula HOM05D000324 ORTHO05D004875 1.6e-35 153.7 117 62.4
Carub.0003s2409 Capsella rubella HOM05D000324 ORTHO05D004875 3.5e-35 152.5 150 52.7
Os03g0845500 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D004875 4.5e-35 152.1 99 67.7
BcaB03g14616 Brassica carinata HOM05D000324 ORTHO05D004875 5.9e-35 151.8 125 60.0
PSO063G7360 Papaver somniferum HOM05D000324 ORTHO05D004875 7.7e-35 151.4 159 49.7
QL06p026672 Quercus lobata HOM05D000324 ORTHO05D004875 7.7e-35 151.4 100 67.0
Hund24436 Selenicereus undatus HOM05D000324 ORTHO05D004875 7.7e-35 151.4 112 63.4
ATR0069G039 Amborella trichopoda HOM05D000324 ORTHO05D004875 2.3e-34 149.8 101 67.3
Aa31LG9G3300 Aethionema arabicum HOM05D000324 ORTHO05D004875 2.9e-34 149.4 144 53.5
A03p43350 Brassica napus HOM05D000324 ORTHO05D004875 2.9e-34 149.4 149 51.7
AUR62018517 Chenopodium quinoa HOM05D000324 ORTHO05D004875 2.9e-34 149.4 165 45.5
ECA248G0353 Erigeron canadensis HOM05D000324 ORTHO05D004875 5.0e-34 148.7 107 63.6
PSO017G1881 Papaver somniferum HOM05D000324 ORTHO05D004875 5.0e-34 148.7 161 48.4
ECA248G2180 Erigeron canadensis HOM05D000324 ORTHO05D004875 6.5e-34 148.3 109 59.6
Thhalv10002419m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.1e-33 147.5 156 49.4
Aqoxy2G03912 Aquilegia oxysepala HOM05D000324 ORTHO05D004875 1.9e-33 146.7 122 53.3
Thhalv10024478m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.9e-33 146.7 144 54.9
ECA248G0929 Erigeron canadensis HOM05D000324 ORTHO05D004875 3.3e-33 146.0 106 60.4
Hund19019 Selenicereus undatus HOM05D000324 ORTHO05D004875 9.5e-33 144.4 111 57.7
AUR62020902 Chenopodium quinoa HOM05D000324 ORTHO05D004875 2.8e-32 142.9 164 44.5
EL10Ac3g07424 Beta vulgaris HOM05D000324 ORTHO05D004875 1.8e-31 140.2 161 44.1
Haze_11666 Corylus avellana HOM05D000001 ORTHO05D004875 1.8e-31 140.2 113 61.1
Rhsim09G0061500 Rhododendron simsii HOM05D000324 ORTHO05D004875 2.6e-30 136.3 227 39.6
Ah.04g149530 Amaranthus hybridus HOM05D000020 ORTHO05D004875 8.3e-29 131.3 157 46.5
Pp3c23_17210 Physcomitrium patens HOM05D000324 ORTHO05D004875 9.2e-28 127.9 99 57.6
AagrBONN_evm.TU.Sc2ySwM_344.4832 Anthoceros agrestis HOM05D000324 ORTHO05D004875 2.9e-26 122.9 111 51.4
SMO364G0046 Selaginella moellendorffii HOM05D000324 ORTHO05D004875 1.9e-25 120.2 77 64.9
Mapoly0169s0028 Marchantia polymorpha HOM05D000324 ORTHO05D004875 3.3e-25 119.4 100 52.0
Pp3c19_18340 Physcomitrium patens HOM05D000324 ORTHO05D004875 4.7e-24 115.5 125 46.4
Lsat_1_v5_gn_4_165800 Lactuca sativa HOM05D000324 ORTHO05D004875 3.0e-23 112.8 86 59.3
CBR_g38044 Chara braunii HOM05D000324 ORTHO05D004875 9.2e-20 101.3 92 45.7
Cre06.g299800 Chlamydomonas reinhardtii HOM05D000324 ORTHO05D004875 1.2e-14 84.3 86 45.3
RcHm_v2.0_Chr7g0233811 Rosa chinensis HOM05D000324 ORTHO05D004875 1.5e-14 84.0 45 82.2
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 2.6e-14 83.2 49 77.6
Lsat_1_v5_gn_8_136320 Lactuca sativa HOM05D000324 ORTHO05D004875 5.8e-14 82.0 109 45.0
PGSC0003DMG400020593 Solanum tuberosum HOM05D000324 ORTHO05D004875 9.8e-14 81.3 45 77.8
Hund24432 Selenicereus undatus HOM05D000324 ORTHO05D004875 4.1e-12 75.9 73 47.9
Hund24431 Selenicereus undatus HOM05D000324 ORTHO05D004875 2.5e-09 66.6 40 75.0
Pp3c8_18330 Physcomitrium patens HOM05D000324 ORTHO05D004875 4.3e-09 65.9 59 49.2
Lsat_1_v5_gn_4_167661 Lactuca sativa HOM05D001999 ORTHO05D001994 6.8e-07 58.5 39 66.7
A08p02220 Brassica napus HOM05D021659 ORTHO05D021956 5.8e-06 55.5 106 33.0
BraA02t08799Z Brassica rapa HOM05D021659 ORTHO05D021956 5.8e-06 55.5 106 33.0


User provided reference genes

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