Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 7.5e-36 153.3 76 100.0
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 3.9e-24 114.4 57 98.2
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-23 112.1 57 96.5
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 1.9e-23 112.1 57 96.5
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 1.9e-23 112.1 57 96.5
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.9e-23 112.1 57 96.5
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 5.6e-23 110.5 57 94.7
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.6e-23 110.5 57 94.7
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.6e-23 110.5 57 94.7
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 7.3e-23 110.2 56 96.4
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 1.2e-22 109.4 57 93.0
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.2e-22 109.4 57 94.7
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 2.1e-22 108.6 57 93.0
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.0e-20 102.1 57 86.0
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 2.0e-20 102.1 57 86.0
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 2.0e-20 102.1 57 86.0
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 2.0e-20 102.1 57 86.0
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 2.2e-19 98.6 57 82.5
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 3.7e-19 97.8 57 80.7
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.7e-19 97.8 57 80.7
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.7e-19 97.8 57 80.7
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.7e-19 97.8 57 80.7
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.7e-19 97.8 57 80.7
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 8.3e-19 96.7 52 88.5
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 1.1e-18 96.3 57 78.9
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 1.4e-18 95.9 57 78.9
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 1.4e-18 95.9 57 78.9
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 2.4e-18 95.1 57 78.9
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 2.4e-18 95.1 57 78.9
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 2.4e-18 95.1 57 77.2
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 9.2e-18 93.2 57 75.4
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 9.2e-18 93.2 59 81.4
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 1.6e-17 92.4 58 79.3
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 2.7e-17 91.7 58 81.0
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 2.7e-17 91.7 58 81.0
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 2.7e-17 91.7 59 79.7
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 3.5e-17 91.3 58 79.3
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 3.5e-17 91.3 58 79.3
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 3.5e-17 91.3 58 79.3
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 4.6e-17 90.9 58 77.6
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 4.6e-17 90.9 58 77.6
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.8e-17 90.1 58 79.3
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 7.8e-17 90.1 58 79.3
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 7.8e-17 90.1 58 79.3
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 1.3e-16 89.4 58 77.6
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.3e-16 89.4 59 78.0
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.7e-16 89.0 59 78.0
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 1.7e-16 89.0 58 77.6
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 2.3e-16 88.6 58 74.1
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 3.0e-16 88.2 58 79.3
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 3.0e-16 88.2 58 75.9
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 3.0e-16 88.2 59 78.0
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 3.0e-16 88.2 59 78.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 3.0e-16 88.2 58 77.6
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.9e-16 87.8 58 75.9
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.9e-16 87.8 58 75.9
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 3.9e-16 87.8 58 77.6
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 6.6e-16 87.0 59 76.3
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 77.6
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 8.6e-16 86.7 58 75.9
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 1.5e-15 85.9 58 74.1
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 5.6e-15 84.0 57 71.9
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 5.6e-15 84.0 59 74.6
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 2.1e-14 82.0 60 71.7
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 2.8e-14 81.6 49 83.7
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 4.7e-14 80.9 58 72.4
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 4.7e-14 80.9 60 70.0
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 4.7e-14 80.9 60 70.0
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 8.1e-14 80.1 60 70.0
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 1.1e-13 79.7 60 70.0
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.8e-13 79.0 53 71.7
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.4e-13 78.6 60 68.3
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.4e-13 78.6 60 68.3
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.4e-13 78.6 60 66.7
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.4e-13 78.6 60 66.7
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.4e-13 78.6 60 66.7
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 2.4e-13 78.6 60 66.7
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 5.2e-13 77.4 55 72.7
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 5.2e-13 77.4 54 66.7
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 8.9e-13 76.6 53 69.8
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.2e-12 76.3 46 76.1
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-12 75.9 53 69.8
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 2.6e-12 75.1 53 71.7
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 7.6e-12 73.6 57 63.2
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 7.6e-12 73.6 60 63.3
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 9.9e-12 73.2 60 63.3
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 9.9e-12 73.2 60 63.3
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 9.9e-12 73.2 60 63.3
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 9.9e-12 73.2 60 63.3
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 9.9e-12 73.2 60 63.3
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.7e-11 72.4 49 67.3
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 1.7e-11 72.4 49 65.3
Medtr1g011670 Medicago truncatula HOM05D005020 ORTHO05D006017 2.2e-11 72.0 37 94.6
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 6.4e-11 70.5 58 62.1
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 5.4e-10 67.4 73 52.1
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 7.1e-10 67.0 58 56.9
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 9.2e-10 66.6 44 70.5
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 3.5e-09 64.7 53 58.5
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 4.6e-09 64.3 58 60.3
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.3e-08 62.8 54 57.4
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 3.9e-08 61.2 50 58.0
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 6.6e-08 60.5 44 63.6
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 6.6e-08 60.5 44 63.6
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 6.6e-08 60.5 51 58.8
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 6.6e-08 60.5 55 54.5
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 8.7e-08 60.1 54 57.4
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 8.7e-08 60.1 53 52.8
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.5e-07 59.3 44 61.4
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 2.5e-07 58.5 54 55.6
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 4.3e-07 57.8 44 61.4
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 5.6e-07 57.4 48 56.2
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.6e-07 57.4 47 61.7
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 5.6e-07 57.4 57 59.6
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 9.6e-07 56.6 54 55.6
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 1.2e-06 56.2 49 59.2
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 3.6e-06 54.7 54 53.7


User provided reference genes

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