Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 3.8e-73 278.1 144 100.0
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 4.1e-67 258.1 144 95.1
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 5.5e-64 247.7 144 91.0
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 7.5e-61 237.3 144 86.8
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 7.5e-61 237.3 144 86.8
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 7.5e-61 237.3 144 86.8
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 7.5e-61 237.3 141 86.5
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.7e-60 236.1 144 86.1
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 8.3e-60 233.8 133 89.5
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 7.0e-59 230.7 143 85.3
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 5.0e-57 224.6 144 81.9
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 5.0e-57 224.6 144 82.6
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 7.3e-56 220.7 135 83.7
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 1.6e-55 219.5 144 79.2
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.8e-55 218.8 144 79.9
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 6.1e-55 217.6 151 78.1
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 6.1e-55 217.6 143 77.6
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.4e-54 216.5 144 77.8
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.4e-54 216.5 144 77.8
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 3.0e-54 215.3 133 81.2
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.0e-54 215.3 144 77.1
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.0e-54 214.9 144 77.1
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 4.0e-54 214.9 144 77.1
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 6.8e-54 214.2 144 76.4
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 8.9e-54 213.8 125 81.6
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 8.9e-54 213.8 144 77.1
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.2e-53 213.4 144 75.0
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-53 213.4 144 76.4
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-53 213.4 144 76.4
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.2e-53 213.4 144 76.4
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 1.5e-53 213.0 144 75.0
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.5e-53 213.0 140 75.7
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.5e-53 213.0 144 77.1
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.5e-53 213.0 145 77.9
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.5e-53 213.0 144 77.8
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 2.0e-53 212.6 133 79.7
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 2.0e-53 212.6 144 79.2
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 2.6e-53 212.2 144 75.0
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 4.4e-53 211.5 144 77.1
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 5.8e-53 211.1 128 80.5
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 7.5e-53 210.7 143 74.8
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 9.8e-53 210.3 144 75.7
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.7e-52 209.5 144 75.7
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.7e-52 209.5 133 77.4
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 1.7e-52 209.5 144 73.6
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 3.7e-52 208.4 150 73.3
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 6.4e-52 207.6 152 74.3
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 1.1e-51 206.8 144 72.9
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.4e-51 206.5 144 73.6
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.4e-51 206.5 130 76.9
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 1.8e-51 206.1 144 72.9
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.8e-51 206.1 133 75.2
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.4e-51 205.7 144 75.0
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 2.4e-51 205.7 144 72.9
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 2.4e-51 205.7 144 72.9
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 2.4e-51 205.7 144 72.9
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 5.4e-51 204.5 137 74.5
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.2e-50 203.4 125 77.6
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 1.2e-50 203.4 143 73.4
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.6e-50 203.0 144 74.3
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 2.7e-50 202.2 144 73.6
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.7e-50 202.2 144 72.9
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 3.5e-50 201.8 144 72.9
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 3.5e-50 201.8 141 73.0
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 3.5e-50 201.8 144 70.8
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 3.5e-50 201.8 145 73.8
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 3.5e-50 201.8 144 72.9
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 3.5e-50 201.8 144 72.9
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 6.0e-50 201.1 144 72.9
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 6.0e-50 201.1 144 72.9
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 6.0e-50 201.1 144 72.9
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 6.0e-50 201.1 144 70.1
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 7.8e-50 200.7 144 72.9
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 7.8e-50 200.7 144 72.9
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 7.8e-50 200.7 144 72.9
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 7.8e-50 200.7 123 78.9
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 1.0e-49 200.3 123 78.9
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 5.0e-49 198.0 144 71.5
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 5.0e-49 198.0 144 71.5
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 5.0e-49 198.0 144 71.5
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 6.6e-49 197.6 144 72.9
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.6e-49 197.6 167 65.3
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 6.6e-49 197.6 144 70.8
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 6.6e-49 197.6 141 70.2
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.1e-48 196.8 144 70.8
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.5e-48 196.4 123 77.2
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 1.5e-48 196.4 144 72.2
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 4.3e-48 194.9 144 70.1
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.2e-47 193.4 170 63.5
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.2e-47 193.4 135 72.6
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 4.7e-47 191.4 144 66.7
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 6.2e-47 191.0 144 69.4
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 8.0e-47 190.7 125 72.0
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 1.1e-46 190.3 133 70.7
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 1.8e-46 189.5 117 88.9
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.8e-46 189.5 144 69.4
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 5.2e-46 188.0 136 70.6
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 5.2e-46 188.0 129 74.4
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 5.2e-46 188.0 128 71.1
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.2e-45 186.8 135 71.1
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 5.8e-45 184.5 125 70.4
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 3.2e-43 178.7 132 70.5
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 3.2e-43 178.7 132 70.5
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 4.1e-43 178.3 106 82.1
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 4.6e-42 174.9 117 82.1
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 3.0e-41 172.2 144 66.7
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 5.0e-41 171.4 117 77.8
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.3e-40 168.7 117 77.8
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.3e-40 168.7 112 75.9
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.3e-40 168.3 117 76.9
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 2.8e-39 165.6 150 63.3
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 1.4e-38 163.3 117 76.1
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 3.1e-38 162.2 123 64.2
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 4.0e-38 161.8 117 76.1
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 4.4e-37 158.3 134 63.4
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 7.5e-37 157.5 115 67.0
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 2.2e-36 156.0 108 73.1
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 4.9e-36 154.8 135 63.7
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 2.1e-34 149.4 117 69.2
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.0e-33 145.6 106 67.9
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 1.1e-32 143.7 83 83.1
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.5e-32 142.5 85 81.2
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 7.3e-32 141.0 141 55.3
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-30 136.7 147 57.8
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 3.1e-30 135.6 104 61.5
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 9.9e-29 130.6 83 77.1
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 6.4e-28 127.9 181 45.9
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 8.4e-28 127.5 83 77.1
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 8.4e-28 127.5 86 72.1
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 1.4e-27 126.7 83 74.7
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 4.6e-26 121.7 120 55.8
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 7.8e-26 120.9 114 55.3
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 3.3e-24 115.5 65 83.1
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 5.6e-24 114.8 131 52.7
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 3.6e-23 112.1 71 81.7
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.1e-22 110.5 105 61.9
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 2.6e-21 105.9 64 73.4
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 3.2e-19 99.0 102 56.9
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 2.3e-17 92.8 126 41.3
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 3.9e-17 92.0 60 78.3
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.1e-16 90.5 62 69.4
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 2.5e-16 89.4 123 44.7
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.4e-14 83.6 60 71.7
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 5.3e-14 81.6 67 70.1
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.0e-13 79.7 59 71.2
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.9e-13 77.4 66 65.2
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.3e-12 77.0 84 57.1
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 8.4e-12 74.3 59 67.8
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 3.2e-11 72.4 41 82.9
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 4.2e-11 72.0 119 38.7
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 6.7e-09 64.7 82 51.2
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.3e-07 60.5 41 68.3
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 2.1e-07 59.7 51 60.8


User provided reference genes

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