Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15571 Trifolium pratense HOM05D006649 ORTHO05D008754 1.5e-138 496.1 245 100.0
Psat7g189840 Pisum sativum HOM05D006649 ORTHO05D008754 1.7e-113 412.9 246 84.6
Ca_19382_v3 Cicer arietinum L. HOM05D006649 ORTHO05D008754 6.7e-110 401.0 245 81.6
Lj3g0022718 Lotus japonicus HOM05D006649 ORTHO05D008754 3.0e-102 375.6 247 79.4
Lalb_Chr19g0136681 Lupinus albus HOM05D006649 ORTHO05D008754 1.3e-97 360.1 245 76.7
Medtr4g055030 Medicago truncatula HOM05D006649 ORTHO05D008754 2.3e-94 349.4 183 93.4
VMungo1127G2203 Vigna mungo HOM05D006649 ORTHO05D008754 5.1e-94 348.2 246 75.6
Phvul.011G091000 Phaseolus vulgaris HOM05D006649 ORTHO05D008754 1.9e-93 346.3 242 76.0
Glyma.12G086800 Glycine max HOM05D006649 ORTHO05D008754 3.1e-91 339.0 245 73.5
FAN25G2701 Fragaria x ananassa HOM05D006649 ORTHO05D008754 5.9e-90 334.7 249 72.7
MD11G1159700 Malus domestica HOM05D006649 ORTHO05D008754 5.9e-90 334.7 252 71.4
RcHm_v2.0_Chr5g0043851 Rosa chinensis HOM05D006649 ORTHO05D008754 1.4e-88 330.1 248 70.6
Prupe.6G122700 Prunus persica HOM05D006649 ORTHO05D008754 7.2e-88 327.8 250 69.6
Thecc.09G288800 Theobroma cacao HOM05D006649 ORTHO05D008754 7.2e-88 327.8 244 72.5
QL01p013359 Quercus lobata HOM05D006649 ORTHO05D008754 3.9e-86 322.0 184 85.3
arahy.Tifrunner.gnm1.ann1.AS0IPM Arachis hypogaea HOM05D006649 ORTHO05D008754 3.3e-85 318.9 266 65.0
arahy.Tifrunner.gnm1.ann1.WDN5HE Arachis hypogaea HOM05D006649 ORTHO05D008754 3.3e-85 318.9 266 65.0
Gohir.D05G085700 Gossypium hirsutum HOM05D006649 ORTHO05D008754 3.3e-85 318.9 240 71.7
Gorai.009G087400 Gossypium raimondii HOM05D000146 ORTHO05D000178 3.3e-85 318.9 240 71.7
Haze_23431 Corylus avellana HOM05D006649 ORTHO05D008754 1.7e-84 316.6 187 84.0
Glyma.11G187700 Glycine max HOM05D006649 ORTHO05D008754 1.7e-84 316.6 183 85.2
Nn6g35002 Nelumbo nucifera HOM05D006649 ORTHO05D008754 1.7e-84 316.6 206 76.7
TAR633G2780 Trochodendron aralioides HOM05D006649 ORTHO05D008754 1.1e-83 313.9 201 77.6
CiPaw.13G139500 Carya illinoinensis HOM05D006649 ORTHO05D008754 1.4e-83 313.5 187 82.4
GSVIVG01031373001 Vitis vinifera HOM05D006649 ORTHO05D008754 1.4e-83 313.5 183 83.6
Cfa010067 Carpinus fangiana HOM05D006649 ORTHO05D008754 2.4e-83 312.8 187 83.4
Gohir.A05G082800 Gossypium hirsutum HOM05D006649 ORTHO05D008754 2.4e-83 312.8 241 70.5
Potri.009G146800 Populus trichocarpa HOM05D006649 ORTHO05D008754 2.4e-83 312.8 249 66.3
TPR.G9708 Trifolium pratense HOM05D006649 ORTHO05D008754 2.4e-83 312.8 186 85.5
Atru.chr3.3344 Acer truncatum HOM05D006649 ORTHO05D008754 6.9e-83 311.2 252 67.1
Duzib170G0763 Durio zibethinus HOM05D006649 ORTHO05D008754 1.5e-82 310.1 270 64.4
Sabra09G0115900 Salix brachista HOM05D006649 ORTHO05D008754 3.4e-82 308.9 247 66.8
TWI79G0266 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 3.4e-82 308.9 239 69.9
TWI79G0985 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 3.4e-82 308.9 239 69.9
Hma1.2p1_0695F.1_g204540 Hydrangea macrophylla HOM05D006649 ORTHO05D008754 4.5e-82 308.5 250 66.4
Potri.004G186400 Populus trichocarpa HOM05D006649 ORTHO05D008754 1.0e-81 307.4 230 70.0
CsaV3_6G014840 Cucumis sativus L. HOM05D006649 ORTHO05D008754 3.2e-80 302.4 252 65.5
Nn2g14062 Nelumbo nucifera HOM05D006649 ORTHO05D008754 4.2e-80 302.0 177 83.6
Actinidia24190 Actinidia chinensis HOM05D006649 ORTHO05D008754 2.7e-79 299.3 183 80.3
Lsat_1_v5_gn_1_62060 Lactuca sativa HOM05D006649 ORTHO05D008754 2.7e-79 299.3 240 67.9
Manes.11G159300 Manihot esculenta HOM05D006649 ORTHO05D008754 2.7e-79 299.3 184 79.3
CANSAT54G3044 Cannabis sativa HOM05D006649 ORTHO05D008754 3.6e-79 298.9 168 82.1
HanXRQChr01g0019741 Helianthus annuus HOM05D006649 ORTHO05D008754 3.6e-79 298.9 231 69.3
Manes.04G006800 Manihot esculenta HOM05D006649 ORTHO05D008754 3.6e-79 298.9 246 63.8
vmacro03292 Vaccinium macrocarpon HOM05D006649 ORTHO05D008754 6.1e-79 298.1 257 64.2
PSO384G2883 Papaver somniferum HOM05D006649 ORTHO05D008754 7.9e-79 297.7 233 67.4
SGA_v2.0_scaffold147G36353 Striga asiatica HOM05D006649 ORTHO05D008754 2.3e-78 296.2 240 65.0
Rhsim13G0107300 Rhododendron simsii HOM05D006649 ORTHO05D008754 3.0e-78 295.8 238 65.1
Lj2A991T88 Lonicera japonica HOM05D006649 ORTHO05D008754 5.2e-78 295.0 236 67.4
Cc01_g09580 Coffea canephora HOM05D006649 ORTHO05D008754 8.8e-78 294.3 185 78.4
Eucgr.J00458 Eucalyptus grandis HOM05D006649 ORTHO05D008754 2.0e-77 293.1 223 67.3
PGR119G1752 Punica granatum HOM05D006649 ORTHO05D008754 2.0e-77 293.1 181 80.1
Oeu035544.1 Olea europaea HOM05D006649 ORTHO05D008754 5.7e-77 291.6 188 76.6
PSO339G3959 Papaver somniferum HOM05D006649 ORTHO05D008754 1.3e-76 290.4 182 76.9
SalBow6G0396 Salvia bowleyana HOM05D006649 ORTHO05D008754 1.3e-76 290.4 208 70.7
Sabra04G0125600 Salix brachista HOM05D006649 ORTHO05D008754 3.7e-76 288.9 173 82.1
Hund20864 Selenicereus undatus HOM05D006649 ORTHO05D008754 6.3e-76 288.1 247 66.0
Solyc11g067060.3 Solanum lycopersicum HOM05D006649 ORTHO05D008754 1.1e-75 287.3 224 65.6
Sopen11g026770 Solanum pennellii HOM05D006649 ORTHO05D008754 4.1e-75 285.4 171 79.5
DCAR_006154 Daucus carota HOM05D006649 ORTHO05D008754 5.3e-75 285.0 176 78.4
PGSC0003DMG400026546 Solanum tuberosum HOM05D006649 ORTHO05D008754 5.3e-75 285.0 168 81.0
AUR62039249 Chenopodium quinoa HOM05D006649 ORTHO05D008754 7.0e-75 284.6 177 79.7
COL.COLO4_19946 Corchorus olitorius HOM05D000146 ORTHO05D000178 1.6e-74 283.5 162 84.0
C03p69000 Brassica napus HOM05D006649 ORTHO05D008754 2.0e-74 283.1 230 64.8
Nitab4.5_0009861g0020 Nicotiana tabacum HOM05D006649 ORTHO05D008754 2.6e-74 282.7 214 69.6
BcaC01g02065 Brassica carinata HOM05D006649 ORTHO05D008754 3.5e-74 282.3 226 65.5
BolC3t19153H Brassica oleracea HOM05D006649 ORTHO05D008754 3.5e-74 282.3 226 65.5
AUR62009801 Chenopodium quinoa HOM05D006649 ORTHO05D008754 4.5e-74 282.0 234 66.2
Migut.N02505 Erythranthe guttata HOM05D006649 ORTHO05D008754 4.5e-74 282.0 241 63.1
CAN.G644.11 Capsicum annuum HOM05D006649 ORTHO05D008754 1.0e-73 280.8 199 70.4
Sc21g0004770 Simmondsia chinensis HOM05D006649 ORTHO05D008754 1.7e-73 280.0 228 66.2
A06p21790 Brassica napus HOM05D006649 ORTHO05D008754 6.5e-73 278.1 222 66.2
THA.LOC104810902 Tarenaya hassleriana HOM05D006649 ORTHO05D008754 6.5e-73 278.1 212 69.3
ATR0820G177 Amborella trichopoda HOM05D006649 ORTHO05D008754 3.2e-72 275.8 178 75.8
Os08g0557400 Oryza sativa ssp. japonica HOM05D006649 ORTHO05D008754 3.2e-72 275.8 168 76.2
BraA06t25266Z Brassica rapa HOM05D006649 ORTHO05D008754 1.6e-71 273.5 223 65.9
BcaB01g01150 Brassica carinata HOM05D006649 ORTHO05D008754 2.1e-71 273.1 241 59.8
Carub.0015s0017 Capsella rubella HOM05D006649 ORTHO05D008754 2.7e-71 272.7 233 60.9
AT3G44620 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 3.6e-71 272.3 181 73.5
Sp5g16580 Schrenkiella parvula HOM05D006649 ORTHO05D008754 4.7e-71 271.9 231 64.1
Carub.0005s1026 Capsella rubella HOM05D006649 ORTHO05D008754 6.1e-71 271.6 230 62.2
HPP92_013801 Vanilla planifolia HOM05D006649 ORTHO05D008754 6.1e-71 271.6 240 57.9
CARHR151530 Cardamine hirsuta HOM05D006649 ORTHO05D008754 8.0e-71 271.2 223 65.0
CSS0006150 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 2.3e-70 269.6 171 77.2
EL10Ac7g15785 Beta vulgaris HOM05D006649 ORTHO05D008754 4.0e-70 268.9 246 60.2
Carub.0015s0012 Capsella rubella HOM05D006649 ORTHO05D008754 5.2e-70 268.5 161 79.5
unitig_8.g3286 Utricularia gibba HOM05D006649 ORTHO05D008754 5.2e-70 268.5 219 63.5
Aa31LG4G14340 Aethionema arabicum HOM05D006649 ORTHO05D008754 7.5e-69 264.6 268 55.2
Actinidia07225 Actinidia chinensis HOM05D006649 ORTHO05D008754 3.2e-64 249.2 188 68.1
Nitab4.5_0006735g0030 Nicotiana tabacum HOM05D006649 ORTHO05D008754 3.2e-64 249.2 159 77.4
CSS0022960 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 3.6e-63 245.7 191 67.0
Mapoly0056s0130 Marchantia polymorpha HOM05D006649 ORTHO05D008754 9.8e-61 237.7 164 66.5
Pp3c2_15060 Physcomitrium patens HOM05D006649 ORTHO05D008754 2.8e-60 236.1 169 66.9
CBR_g29713 Chara braunii HOM05D006649 ORTHO05D008754 1.4e-59 233.8 182 63.2
MELO3C021441.2 Cucumis melo HOM05D006649 ORTHO05D008754 5.4e-59 231.9 229 58.5
SMO356G0095 Selaginella moellendorffii HOM05D006649 ORTHO05D008754 2.0e-58 229.9 175 63.4
CDE08G1146 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 5.9e-58 228.4 225 57.3
ClCG02G022010 Citrullus lanatus HOM05D006649 ORTHO05D008754 1.1e-56 224.2 244 56.6
FvH4_3g24360 Fragaria vesca HOM05D006649 ORTHO05D008754 2.8e-55 219.5 176 71.6
Zm00001eb339600 Zea mays HOM05D006649 ORTHO05D008754 2.8e-52 209.5 131 75.6
Zm00001eb382760 Zea mays HOM05D006649 ORTHO05D008754 4.5e-50 202.2 130 73.8
Peaxi162Scf01284g00017 Petunia axillaris HOM05D006649 ORTHO05D008754 1.6e-47 193.7 163 62.6
Dinv29440 Davidia involucrata HOM05D006649 ORTHO05D008754 6.1e-47 191.8 117 77.8
Ah.15g095620 Amaranthus hybridus HOM05D006649 ORTHO05D008754 2.0e-45 186.8 118 75.4
Thhalv10002731m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 7.5e-45 184.9 114 77.2
AL5G22760 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 9.2e-43 177.9 114 74.6
AL5G22830 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 2.7e-42 176.4 114 72.8
Cre14.g632767 Chlamydomonas reinhardtii HOM05D006649 ORTHO05D008754 1.8e-38 163.7 182 47.8
Sed0010741 Sechium edule HOM05D006649 ORTHO05D008754 4.0e-38 162.5 163 60.7
PRCOL_00004711 Prasinoderma coloniale HOM05D006649 ORTHO05D008754 2.0e-37 160.2 177 46.3
Duzib168G0232 Durio zibethinus HOM05D006649 ORTHO05D008754 2.2e-36 156.8 110 73.6
Zm00001eb039610 Zea mays HOM05D006649 ORTHO05D008754 2.9e-36 156.4 105 75.2
SEGI_31986 Sequoiadendron giganteum HOM05D006649 ORTHO05D008754 8.3e-36 154.8 109 68.8
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.3e-20 104.4 154 39.0
Thhalv10003008m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 2.7e-18 96.7 116 53.4
CDE06G0522 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 1.5e-16 90.9 66 66.7
Mapoly0054s0048 Marchantia polymorpha HOM05D006649 ORTHO05D023509 1.8e-14 84.0 187 28.9
CBR_g19487 Chara braunii HOM05D006649 ORTHO05D023509 9.9e-13 78.2 170 28.8
Pp3c1_29030 Physcomitrium patens HOM05D006649 ORTHO05D023509 6.4e-12 75.5 181 27.1
GSVIVG01023086001 Vitis vinifera HOM05D006649 ORTHO05D008754 5.4e-11 72.4 77 46.8
AT3G44485 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 1.8e-06 57.4 60 51.7


User provided reference genes

Program Settings