Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 6.3e-213 743.8 368 100.0
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 1.7e-202 709.1 368 95.4
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 1.1e-201 706.4 368 93.2
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.6e-200 702.6 368 94.0
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 1.5e-190 669.5 366 88.3
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 9.8e-190 666.8 366 89.6
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.4e-188 662.9 366 87.2
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 3.1e-188 661.8 366 86.9
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 5.4e-188 661.0 366 86.9
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 4.5e-187 657.9 366 86.1
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.7e-186 656.0 366 87.7
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.3e-186 655.6 366 86.6
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 8.6e-186 653.7 370 84.6
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 8.6e-186 653.7 366 87.4
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 1.9e-185 652.5 366 85.8
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 7.3e-185 650.6 366 86.1
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 7.3e-185 650.6 366 85.0
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.1e-184 647.5 366 85.8
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 8.0e-184 647.1 366 85.0
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 1.8e-183 646.0 366 85.0
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.3e-183 645.6 366 85.5
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 8.9e-183 643.7 363 85.1
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.0e-182 642.5 405 78.5
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 4.4e-182 641.3 361 85.6
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 5.7e-182 641.0 364 85.2
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 5.7e-182 641.0 366 85.2
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 5.7e-182 641.0 378 82.3
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 9.8e-182 640.2 366 83.9
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.8e-182 640.2 366 83.6
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.8e-182 640.2 366 83.6
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.7e-181 639.4 366 83.9
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.1e-180 636.7 366 84.4
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.8e-180 636.0 364 84.3
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.8e-180 636.0 363 83.7
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 4.1e-180 634.8 366 82.5
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 7.0e-180 634.0 365 84.7
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 7.0e-180 634.0 366 84.4
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.0e-180 634.0 366 82.8
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 9.2e-180 633.6 371 83.3
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 9.2e-180 633.6 366 83.6
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.2e-179 633.3 366 83.9
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.2e-179 633.3 366 83.9
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 1.2e-179 633.3 366 83.9
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.7e-179 632.1 366 83.9
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 3.5e-179 631.7 366 83.9
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.5e-179 631.7 365 84.4
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 4.6e-179 631.3 366 83.6
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 4.6e-179 631.3 366 83.6
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.0e-178 630.2 366 83.6
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.3e-178 629.8 364 83.8
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.7e-178 629.4 366 83.1
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.3e-178 629.0 364 83.2
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 5.0e-178 627.9 366 83.1
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 1.1e-177 626.7 366 82.5
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.9e-177 625.9 365 83.6
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.9e-177 625.9 366 83.1
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 1.9e-177 625.9 366 83.1
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 3.3e-177 625.2 366 83.1
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 3.3e-177 625.2 365 83.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.3e-177 625.2 366 81.7
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 4.3e-177 624.8 366 81.7
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 7.3e-177 624.0 366 82.5
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 9.5e-177 623.6 365 83.8
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 9.5e-177 623.6 365 82.5
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.5e-177 623.6 364 83.0
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.6e-176 622.9 366 82.0
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.1e-176 622.5 366 81.4
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 4.7e-176 621.3 364 82.1
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 8.0e-176 620.5 364 82.7
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-175 620.2 364 82.7
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.1e-175 618.6 364 82.7
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 3.1e-175 618.6 366 81.1
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 8.9e-175 617.1 366 82.2
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 2.0e-174 615.9 362 81.5
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 4.4e-174 614.8 362 81.5
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 4.4e-174 614.8 362 81.5
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 4.4e-174 614.8 362 81.5
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 4.4e-174 614.8 362 81.5
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 4.4e-174 614.8 362 81.5
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 4.4e-174 614.8 364 82.1
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 4.4e-174 614.8 366 82.2
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 5.8e-174 614.4 357 83.5
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 5.8e-174 614.4 364 81.3
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 5.8e-174 614.4 347 86.7
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.5e-174 614.0 364 81.9
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 9.8e-174 613.6 397 77.1
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 9.8e-174 613.6 364 81.6
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.3e-173 613.2 362 79.8
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 3.2e-172 608.6 366 80.6
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.2e-172 608.6 377 78.8
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 5.4e-172 607.8 366 80.9
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 7.0e-172 607.4 366 80.3
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 2.7e-171 605.5 364 80.5
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.0e-170 603.6 364 79.1
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 5.0e-170 601.3 350 82.0
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 6.6e-170 600.9 366 79.8
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 6.6e-170 600.9 360 79.4
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.9e-169 599.4 353 83.3
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 3.3e-169 598.6 391 76.5
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 7.3e-169 597.4 364 80.5
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 7.3e-169 597.4 362 80.9
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 2.1e-168 595.9 362 80.7
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 3.1e-167 592.0 364 78.8
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 4.0e-167 591.7 345 82.9
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-166 590.1 361 78.9
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.0e-166 589.3 366 79.8
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 2.6e-166 589.0 364 76.9
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.7e-165 586.3 366 76.5
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.1e-164 583.6 363 79.9
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.4e-164 582.4 362 79.0
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.3e-162 576.6 344 81.4
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.3e-162 576.6 366 77.3
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 6.6e-162 574.3 363 76.9
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 6.6e-162 574.3 363 77.4
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.8e-160 568.9 362 74.9
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 6.2e-160 567.8 367 75.5
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 8.1e-160 567.4 364 77.7
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.4e-159 566.6 364 75.3
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.4e-159 566.6 362 74.9
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 3.1e-159 565.5 361 78.4
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 4.0e-159 565.1 364 78.0
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 8.9e-159 563.9 368 74.5
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 1.2e-158 563.5 360 75.0
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.0e-158 562.8 430 67.0
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 4.4e-158 561.6 367 74.1
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 7.6e-158 560.8 360 77.5
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 9.9e-158 560.5 344 79.9
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 9.9e-158 560.5 366 75.7
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.7e-157 559.7 366 74.9
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 1.7e-157 559.7 360 77.5
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 5.4e-156 554.7 367 73.0
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.6e-155 553.1 345 79.4
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.9e-153 546.2 367 72.5
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.3e-153 545.0 364 74.5
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.2e-152 543.5 367 71.7
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 7.1e-148 527.7 364 67.3
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 3.5e-147 525.4 369 71.3
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 6.6e-146 521.2 365 67.9
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.1e-145 520.4 386 69.9
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.8e-144 515.8 364 66.2
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.8e-144 515.8 365 65.8
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.0e-143 511.9 365 65.8
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 2.0e-142 509.6 366 66.9
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 4.5e-142 508.4 355 68.2
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.7e-141 506.5 356 70.2
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 6.0e-139 498.0 366 65.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 5.3e-135 485.0 365 62.5
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 6.9e-135 484.6 289 81.0
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 5.5e-132 474.9 326 73.3
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 9.3e-132 474.2 277 83.0
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 7.9e-131 471.1 284 79.2
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 7.9e-131 471.1 349 69.9
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.8e-128 462.6 359 64.3
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 5.3e-127 458.4 273 81.0
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.2e-126 457.2 274 82.1
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.9e-124 449.9 272 80.1
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.0e-122 444.1 328 68.0
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 3.0e-122 442.6 274 78.5
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 3.7e-120 435.6 275 78.5
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 3.7e-120 435.6 382 55.2
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 8.5e-117 424.5 362 56.6
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 3.0e-114 416.0 285 70.5
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.1e-113 414.1 396 53.3
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.5e-113 413.7 240 83.8
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 4.1e-111 405.6 275 70.5
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 2.2e-109 399.8 360 54.4
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.3e-89 332.8 201 81.1
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 3.3e-89 332.8 274 63.5
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.5e-86 322.8 178 85.4
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.2e-84 316.2 193 79.8
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 4.7e-83 312.4 197 75.1
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 4.7e-67 259.2 166 78.3
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 3.7e-56 223.0 265 50.6
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.2e-46 191.4 363 31.1
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 1.9e-44 184.1 452 29.6
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.4e-42 177.9 114 78.1
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.7e-40 171.0 392 27.3
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.4e-39 167.9 119 68.1
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 7.1e-39 165.6 147 60.5
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 3.5e-38 163.3 119 66.4
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 2.4e-34 150.6 113 64.6
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 6.9e-34 149.1 298 30.2
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 5.6e-28 129.4 77 77.9
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 2.4e-10 70.9 49 73.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 2.2e-08 64.3 68 51.5


User provided reference genes

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