Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 2.6e-214 748.4 370 100.0
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 4.0e-199 698.0 364 93.4
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 2.7e-195 685.3 364 91.5
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 4.7e-192 674.5 365 90.1
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.5e-190 669.5 387 86.0
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 2.0e-190 669.1 364 89.6
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 4.6e-187 657.9 364 87.9
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.0e-186 656.8 364 87.9
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 3.9e-186 654.8 364 87.4
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.1e-185 653.3 377 85.9
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.9e-185 652.5 364 87.4
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 2.1e-184 649.0 364 86.5
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 3.6e-184 648.3 386 82.6
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 3.1e-175 618.6 360 80.8
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 3.4e-174 615.1 358 81.6
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.4e-172 609.0 358 81.8
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 3.2e-172 608.6 358 80.4
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 4.2e-172 608.2 358 81.3
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.4e-172 607.8 364 79.9
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.1e-171 605.9 358 81.0
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 4.6e-171 604.7 364 79.7
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 7.8e-171 604.0 358 80.7
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.3e-170 603.2 358 81.8
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.3e-170 603.2 359 79.1
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 2.3e-170 602.4 358 79.9
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.3e-170 602.4 367 78.5
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.1e-169 600.1 365 77.8
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.5e-169 599.7 359 78.3
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.5e-169 599.0 358 79.6
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 9.6e-169 597.0 364 77.2
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 1.6e-168 596.3 364 77.7
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.1e-168 595.9 358 79.6
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 4.8e-168 594.7 358 80.7
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 8.1e-168 594.0 358 79.3
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 2.4e-167 592.4 364 76.9
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 4.0e-167 591.7 364 78.3
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 9.0e-167 590.5 361 76.5
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 9.0e-167 590.5 364 78.0
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.5e-166 589.7 362 78.2
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.6e-166 589.0 364 78.3
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.6e-166 589.0 364 78.3
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 3.4e-166 588.6 361 77.3
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 3.4e-166 588.6 357 77.6
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.4e-166 588.2 358 79.6
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 7.6e-166 587.4 357 78.2
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 7.6e-166 587.4 358 79.9
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 9.9e-166 587.0 362 78.5
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 3.8e-165 585.1 358 79.1
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 3.8e-165 585.1 362 76.2
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 4.9e-165 584.7 357 77.3
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 8.4e-165 583.9 357 76.2
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 1.4e-164 583.2 357 76.5
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.4e-164 582.4 362 76.5
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 3.2e-164 582.0 358 76.0
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 9.3e-164 580.5 364 77.2
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.2e-163 580.1 357 77.3
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.2e-163 580.1 359 78.3
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.6e-163 579.7 357 77.9
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 1.6e-163 579.7 357 75.9
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.6e-163 579.7 364 77.2
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-163 578.9 387 74.4
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 3.5e-163 578.6 357 77.0
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 3.5e-163 578.6 357 77.0
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 4.6e-163 578.2 362 75.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 1.3e-162 576.6 358 74.6
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.0e-162 575.5 357 75.6
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 3.0e-162 575.5 357 78.2
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 3.0e-162 575.5 358 75.7
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 3.9e-162 575.1 360 77.8
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 8.7e-162 573.9 358 76.8
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 8.7e-162 573.9 362 74.3
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.1e-161 573.5 358 77.7
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 7.3e-161 570.9 358 76.5
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.1e-160 569.3 362 73.8
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 3.6e-160 568.5 364 75.0
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 6.2e-160 567.8 364 75.8
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 8.1e-160 567.4 397 70.5
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 8.1e-160 567.4 364 75.3
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.1e-160 567.4 357 77.0
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.1e-159 567.0 358 76.5
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-159 566.6 357 76.8
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 2.4e-159 565.8 364 74.7
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.2e-158 563.5 358 74.0
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 2.6e-158 562.4 357 76.2
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 3.4e-158 562.0 358 76.8
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.4e-158 562.0 404 70.0
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 5.8e-158 561.2 358 74.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 4.9e-157 558.1 361 73.1
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 6.4e-157 557.8 376 74.5
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 6.4e-157 557.8 380 70.8
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 2.4e-156 555.8 358 72.3
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.5e-155 552.0 357 73.7
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 7.9e-155 550.8 361 75.1
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 3.0e-154 548.9 358 74.6
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.3e-152 543.5 345 76.8
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 3.7e-152 542.0 505 56.2
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.8e-151 539.7 358 71.8
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.8e-151 539.7 361 69.5
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.3e-146 522.7 360 72.2
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 1.5e-137 493.4 359 66.6
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 8.5e-133 477.6 282 80.9
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 5.7e-129 464.9 361 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 7.4e-129 464.5 368 61.7
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.4e-127 460.3 282 76.2
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 5.3e-127 458.4 282 76.6
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.5e-118 430.3 364 58.2
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 4.7e-115 418.7 377 56.5
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.4e-114 417.2 297 69.0
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 2.3e-114 416.4 358 60.1
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 2.6e-110 402.9 378 57.7
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 2.1e-107 393.3 358 56.4
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.3e-104 384.0 253 71.9
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 2.0e-102 376.7 272 68.0
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 8.0e-99 364.8 249 75.1
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 5.0e-93 345.5 181 85.1
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 3.9e-85 319.3 182 79.1
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 6.6e-85 318.5 181 80.1
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.1e-83 313.5 243 67.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.1e-83 313.5 249 66.3
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.9e-79 300.4 433 42.7
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 5.4e-79 298.9 448 41.7
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 1.6e-78 297.4 359 46.8
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 7.5e-73 278.5 153 78.4
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.9e-72 276.6 236 59.3
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 5.4e-71 272.3 358 43.3
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.2e-67 261.2 195 68.2
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.6e-62 242.7 184 66.3
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.1e-61 239.2 161 68.3
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 4.4e-57 226.1 236 52.5
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 1.0e-53 214.9 157 70.1
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.1e-42 178.3 116 74.1
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.2e-41 174.9 102 85.3
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 5.8e-41 172.6 111 79.3
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.2e-39 166.4 96 79.2
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 7.9e-38 162.2 106 73.6
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 7.4e-36 155.6 106 72.6
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 3.1e-34 150.2 106 71.7
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 2.7e-30 137.1 90 74.4
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.9e-28 131.0 62 91.9
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.3e-24 118.2 66 86.4
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 4.2e-23 113.2 68 82.4
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 7.2e-23 112.5 71 81.7
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 7.2e-23 112.5 71 81.7
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 7.2e-23 112.5 71 81.7
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.1e-21 106.3 73 71.2
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.3e-19 101.7 102 54.9
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.8e-18 97.8 97 49.5
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 3.2e-15 87.0 44 90.9
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.1e-14 82.8 56 75.0
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 3.3e-12 77.0 306 27.5
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 9.1e-10 68.9 37 89.2
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 9.1e-10 68.9 37 89.2
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.0e-09 67.8 49 71.4
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 2.6e-09 67.4 37 86.5
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 2.6e-09 67.4 41 75.6
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 5.0e-08 63.2 302 27.2
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.1e-07 62.0 231 28.1
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.1e-07 62.0 272 28.7
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.5e-07 60.8 231 27.3
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 2.5e-07 60.8 231 27.3
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.5e-07 60.8 231 27.3
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 4.2e-07 60.1 67 52.2
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 5.5e-07 59.7 179 33.5
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 9.4e-07 58.9 43 67.4
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.2e-06 58.5 231 27.7
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 3.6e-06 57.0 297 25.9
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 4.7e-06 56.6 136 36.8
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 4.7e-06 56.6 185 31.9
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 6.1e-06 56.2 136 33.1
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 7.9e-06 55.8 185 31.9
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 7.9e-06 55.8 38 65.8


User provided reference genes

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