Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1846.2 1017 100.0
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1552.0 957 90.6
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1541.6 959 89.7
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1454.5 960 86.4
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1332.4 961 73.5
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1301.2 964 73.0
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1295.4 963 73.0
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1295.0 959 77.0
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1278.8 967 71.7
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1263.1 958 75.8
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1259.6 954 75.5
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1251.5 960 74.5
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1216.1 952 68.2
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1214.9 967 67.6
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1179.5 1054 62.2
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1174.8 965 69.4
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1155.2 947 65.8
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1152.9 970 64.6
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1149.4 979 65.4
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1146.3 965 64.8
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1145.6 967 64.8
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1134.4 966 68.7
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1128.2 970 61.8
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1127.1 976 64.2
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1125.9 971 68.1
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1114.0 958 67.6
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1107.8 989 67.5
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1106.7 957 67.9
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1105.1 969 64.4
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1102.0 959 66.8
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1099.0 887 70.6
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1096.6 972 66.5
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1092.0 976 60.1
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1088.9 924 64.6
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1087.0 953 66.1
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1086.2 967 62.2
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1085.1 966 61.5
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 975 66.8
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1077.8 967 65.5
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 7.0e-312 1074.7 971 65.2
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 7.0e-312 1074.7 951 65.8
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.4e-311 1073.2 971 65.0
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 2.8e-311 1072.0 967 61.6
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 6.3e-311 1070.8 957 61.4
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 4.0e-310 1068.1 940 63.0
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 4.0e-310 1068.1 972 63.2
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 2.0e-309 1065.8 962 61.2
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 3.4e-309 1065.1 964 62.0
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 3.4e-309 1065.1 943 66.2
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 3.4e-309 1065.1 951 65.8
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 9.9e-309 1063.5 942 63.9
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 2.9e-308 1062.0 908 62.3
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 3.8e-308 1061.6 888 64.2
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.1e-307 1060.1 951 65.8
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 5.4e-307 1057.7 985 63.6
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 2.7e-306 1055.4 897 62.7
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 4.6e-306 1054.7 986 59.7
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 8.7e-305 1050.4 964 61.9
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 1.3e-303 1046.6 962 64.8
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.7e-303 1045.0 908 65.5
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 1.4e-302 1043.1 970 62.5
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 5.3e-302 1041.2 963 60.1
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 4.5e-301 1038.1 970 60.9
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 9.9e-301 1036.9 926 62.2
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 2.2e-300 1035.8 960 64.8
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 1.8e-297 1026.2 1003 57.7
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 3.0e-297 1025.4 985 57.9
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 3.1e-294 1015.4 997 56.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 1.5e-293 1013.1 1011 56.3
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 2.2e-292 1009.2 906 58.7
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 4.2e-291 1005.0 881 59.6
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 9.7e-288 993.8 996 56.7
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 4.8e-287 991.5 935 58.7
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 7.7e-285 984.2 977 56.7
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 5.0e-284 981.5 991 55.9
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 7.9e-282 974.2 975 61.6
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 6.7e-281 971.1 896 61.7
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 9.7e-280 967.2 966 56.0
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.5e-269 933.3 974 59.5
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 5.9e-269 931.4 970 55.4
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 2.5e-267 926.0 961 59.1
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 1.0e-265 920.6 965 58.5
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 2.0e-264 916.4 973 59.6
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.7e-263 912.1 962 58.9
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.7e-263 912.1 962 58.9
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 8.2e-263 911.0 811 63.0
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 8.5e-260 901.0 969 58.1
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 1.0e-257 894.0 958 58.1
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 2.3e-257 892.9 966 53.5
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 4.0e-257 892.1 958 57.8
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 5.2e-257 891.7 966 57.9
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 5.2e-257 891.7 958 58.0
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 5.7e-256 888.3 962 57.9
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 1.3e-255 887.1 960 57.5
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 6.3e-255 884.8 974 57.4
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 3.8e-252 875.5 963 57.2
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 5.0e-252 875.2 956 51.9
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.6e-250 870.2 967 51.4
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 4.1e-246 855.5 1026 49.1
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 5.2e-217 758.8 833 53.4
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 8.9e-217 758.1 807 53.3
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 4.1e-214 749.2 774 53.6
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 2.3e-180 637.1 608 61.3
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 2.5e-174 617.1 979 41.8
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.3e-167 594.7 961 44.7
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 9.4e-158 562.0 824 46.5
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 4.8e-138 496.5 507 55.6
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.0e-124 452.2 538 47.4
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 9.2e-121 439.1 459 52.9
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 3.5e-120 437.2 810 35.6
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 1.6e-85 322.0 781 31.1
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 6.9e-84 316.6 858 29.8
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 3.0e-79 301.2 372 48.7
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 1.2e-64 252.7 535 37.0
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 6.3e-61 240.4 822 25.8
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 3.7e-53 214.5 225 50.2
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.1e-49 203.0 172 61.0
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 7.2e-49 200.3 226 47.3
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 1.6e-32 146.0 82 85.4
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.2e-25 121.7 67 82.1
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 3.0e-23 115.2 66 84.8
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 9.1e-20 103.6 90 58.9
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 2.7e-19 102.1 90 57.8
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 4.5e-19 101.3 117 47.0
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 4.7e-16 91.3 100 51.0
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 6.1e-16 90.9 100 54.0
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.0e-15 88.6 391 27.9
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.5e-11 75.1 150 30.7
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.3e-10 72.4 37 89.2
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 5.6e-09 67.8 62 62.9
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 1.2e-06 60.1 55 54.5


User provided reference genes

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