Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15313 Trifolium pratense HOM05D004367 ORTHO05D004937 3.7e-47 191.0 87 100.0
TPR.G18089 Trifolium pratense HOM05D004367 ORTHO05D004937 2.9e-15 85.1 45 88.9
TPR.G38993 Trifolium pratense HOM05D004367 ORTHO05D004937 3.8e-15 84.7 45 88.9
Medtr2g079330 Medicago truncatula HOM05D004367 ORTHO05D004937 7.1e-14 80.5 45 82.2
Ca_01836_v3 Cicer arietinum L. HOM05D004367 ORTHO05D004937 2.7e-13 78.6 61 65.6
vmacro11860 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.7e-13 78.6 61 62.3
vmacro22868 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.7e-13 78.6 61 62.3
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 3.5e-13 78.2 61 62.3
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 7.8e-13 77.0 61 60.7
Lalb_Chr25g0286441 Lupinus albus HOM05D004367 ORTHO05D004937 1.0e-12 76.6 45 75.6
Glyma.13G277700 Glycine max HOM05D004367 ORTHO05D004937 1.3e-12 76.3 45 80.0
Psat5g242760 Pisum sativum HOM05D004367 ORTHO05D004937 1.7e-12 75.9 45 77.8
arahy.Tifrunner.gnm1.ann1.6ZWE2K Arachis hypogaea HOM05D004367 ORTHO05D004937 2.3e-12 75.5 45 77.8
arahy.Tifrunner.gnm1.ann1.SV3A8G Arachis hypogaea HOM05D004367 ORTHO05D004937 2.3e-12 75.5 45 77.8
Lj3g0015758 Lotus japonicus HOM05D004367 ORTHO05D004937 2.3e-12 75.5 45 77.8
Duzib213G0391 Durio zibethinus HOM05D004367 ORTHO05D004937 6.6e-12 73.9 61 59.0
VMungo1080G0845 Vigna mungo HOM05D004367 ORTHO05D004937 1.1e-11 73.2 45 75.6
Phvul.005G070800 Phaseolus vulgaris HOM05D004367 ORTHO05D004937 1.5e-11 72.8 45 75.6
PGR083G2352 Punica granatum HOM05D004367 ORTHO05D004937 2.5e-11 72.0 45 75.6
Thecc.07G087300 Theobroma cacao HOM05D004367 ORTHO05D004937 2.5e-11 72.0 45 71.1
Actinidia12812 Actinidia chinensis HOM05D004367 ORTHO05D004937 5.6e-11 70.9 61 59.0
Cc05_g12110 Coffea canephora HOM05D004367 ORTHO05D004937 7.3e-11 70.5 63 54.0
Lj1A844G36 Lonicera japonica HOM05D004367 ORTHO05D004937 7.3e-11 70.5 45 71.1
Sed0004687 Sechium edule HOM05D004367 ORTHO05D004937 7.3e-11 70.5 45 71.1
Eucgr.F01119 Eucalyptus grandis HOM05D004367 ORTHO05D004937 1.6e-10 69.3 45 71.1
Gohir.A01G064120 Gossypium hirsutum HOM05D004367 ORTHO05D004937 1.6e-10 69.3 61 55.7
Gohir.D01G051200 Gossypium hirsutum HOM05D004367 ORTHO05D004937 1.6e-10 69.3 61 55.7
MELO3C016705.2 Cucumis melo HOM05D004367 ORTHO05D004937 2.1e-10 68.9 45 68.9
Gorai.002G071000 Gossypium raimondii HOM05D004367 ORTHO05D004937 2.1e-10 68.9 61 55.7
QL05p086116 Quercus lobata HOM05D004367 ORTHO05D004937 2.8e-10 68.6 61 55.7
QL08p021548 Quercus lobata HOM05D004367 ORTHO05D004937 2.8e-10 68.6 61 55.7
Cfa020594 Carpinus fangiana HOM05D004367 ORTHO05D004937 3.6e-10 68.2 45 71.1
TWI39G0928 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 3.6e-10 68.2 45 68.9
CsaV3_4G033760 Cucumis sativus L. HOM05D004367 ORTHO05D004937 4.8e-10 67.8 45 68.9
CSS0040030 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 6.2e-10 67.4 61 54.1
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 6.2e-10 67.4 61 54.1
Atru.chr2.2651 Acer truncatum HOM05D004367 ORTHO05D004937 8.1e-10 67.0 44 70.5
Atru.chr2.2673 Acer truncatum HOM05D004367 ORTHO05D004937 8.1e-10 67.0 44 70.5
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 8.1e-10 67.0 45 66.7
Sabra16G0262900 Salix brachista HOM05D004367 ORTHO05D004937 8.1e-10 67.0 45 66.7
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 8.1e-10 67.0 63 52.4
GSVIVG01014349001 Vitis vinifera HOM05D004367 ORTHO05D004937 8.1e-10 67.0 61 55.7
ClCG11G018120 Citrullus lanatus HOM05D004367 ORTHO05D004937 1.1e-09 66.6 45 68.9
Dinv20169 Davidia involucrata HOM05D000397 ORTHO05D004937 1.4e-09 66.2 45 64.4
Sopen10g002900 Solanum pennellii HOM05D004367 ORTHO05D004937 1.4e-09 66.2 61 54.1
Ciclev10008024m.g Citrus clementina HOM05D004367 ORTHO05D004937 1.8e-09 65.9 45 64.4
Manes.03G110700 Manihot esculenta HOM05D004367 ORTHO05D004937 1.8e-09 65.9 45 66.7
Solyc10g006990.3 Solanum lycopersicum HOM05D004367 ORTHO05D004937 4.0e-09 64.7 61 52.5
HanXRQChr12g0361521 Helianthus annuus HOM05D004367 ORTHO05D004937 6.9e-09 63.9 45 68.9
Lsat_1_v5_gn_5_127821 Lactuca sativa HOM05D004367 ORTHO05D004937 6.9e-09 63.9 45 68.9
Oeu060551.2 Olea europaea HOM05D004367 ORTHO05D004937 9.0e-09 63.5 45 66.7
MSTRG.15226 Avicennia marina HOM05D004367 ORTHO05D004937 1.2e-08 63.2 61 54.1
DCAR_017144 Daucus carota HOM05D004367 ORTHO05D004937 1.2e-08 63.2 44 68.2
Migut.M00812 Erythranthe guttata HOM05D004367 ORTHO05D004937 1.2e-08 63.2 45 66.7
Nitab4.5_0000207g0150 Nicotiana tabacum HOM05D004367 ORTHO05D004937 1.2e-08 63.2 61 52.5
Nitab4.5_0002383g0110 Nicotiana tabacum HOM05D004367 ORTHO05D004937 1.2e-08 63.2 61 52.5
Oeu005412.1 Olea europaea HOM05D004367 ORTHO05D004937 1.2e-08 63.2 61 52.5
Prupe.4G182900 Prunus persica HOM05D004367 ORTHO05D004937 1.2e-08 63.2 45 66.7
TWI38G0759 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 1.2e-08 63.2 45 64.4
FvH4_3g20190 Fragaria vesca HOM05D004367 ORTHO05D004937 1.5e-08 62.8 61 50.8
FAN16G0302 Fragaria x ananassa HOM05D004367 ORTHO05D004937 1.5e-08 62.8 61 50.8
FAN25G3266 Fragaria x ananassa HOM05D004367 ORTHO05D004937 1.5e-08 62.8 61 50.8
Potri.001G400800 Populus trichocarpa HOM05D004367 ORTHO05D004937 2.0e-08 62.4 45 64.4
RcHm_v2.0_Chr5g0034001 Rosa chinensis HOM05D004367 ORTHO05D004937 2.0e-08 62.4 45 62.2
Ciclev10008854m.g Citrus clementina HOM05D004367 ORTHO05D004937 3.4e-08 61.6 45 60.0
SalBow8G0254 Salvia bowleyana HOM05D004367 ORTHO05D004937 3.4e-08 61.6 46 65.2
MD03G1226500 Malus domestica HOM05D004367 ORTHO05D004937 4.4e-08 61.2 45 66.7
TAR624G0790 Trochodendron aralioides HOM05D004367 ORTHO05D004937 4.4e-08 61.2 45 62.2
FAN21G3330 Fragaria x ananassa HOM05D004367 ORTHO05D004937 5.8e-08 60.8 61 49.2
Hma1.2p1_0480F.1_g161800 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 5.8e-08 60.8 45 64.4
Hma1.2p1_0480F.1_g161810 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 5.8e-08 60.8 45 64.4
Peaxi162Scf00027g02615 Petunia axillaris HOM05D004367 ORTHO05D004937 5.8e-08 60.8 61 50.8
SGA_v2.0_scaffold34G13821 Striga asiatica HOM05D004367 ORTHO05D004937 5.8e-08 60.8 44 65.9
COL.COLO4_09395 Corchorus olitorius HOM05D004367 ORTHO05D004937 7.6e-08 60.5 46 65.2
ECA234G0664 Erigeron canadensis HOM05D004367 ORTHO05D004937 7.6e-08 60.5 45 66.7
THA.LOC104799923 Tarenaya hassleriana HOM05D004367 ORTHO05D004937 9.9e-08 60.1 46 58.7
unitig_899.g15291 Utricularia gibba HOM05D004367 ORTHO05D004937 9.9e-08 60.1 59 55.9
CARHR266920 Cardamine hirsuta HOM05D004367 ORTHO05D004937 1.3e-07 59.7 45 62.2
Nn1g06556 Nelumbo nucifera HOM05D004367 ORTHO05D004937 1.3e-07 59.7 45 62.2
AL8G28710 Arabidopsis lyrata HOM05D004367 ORTHO05D004937 1.7e-07 59.3 45 62.2
AT5G53770 Arabidopsis thaliana HOM05D004367 ORTHO05D004937 1.7e-07 59.3 45 62.2
Carub.0008s1407 Capsella rubella HOM05D004367 ORTHO05D004937 1.7e-07 59.3 45 62.2
Hma1.2p1_2210F.1_g317160 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 1.7e-07 59.3 45 62.2
Ah.06g184060 Amaranthus hybridus HOM05D004367 ORTHO05D004937 2.2e-07 58.9 63 42.9
BcaB05g22072 Brassica carinata HOM05D004367 ORTHO05D004937 2.2e-07 58.9 45 62.2
BcaB08g35738 Brassica carinata HOM05D004367 ORTHO05D004937 2.2e-07 58.9 45 62.2
A10p11150 Brassica napus HOM05D004367 ORTHO05D004937 2.2e-07 58.9 45 62.2
C09p43730 Brassica napus HOM05D004367 ORTHO05D004937 2.2e-07 58.9 45 62.2
BraA10t43208Z Brassica rapa HOM05D004367 ORTHO05D004937 2.2e-07 58.9 45 62.2
Sp6g15840 Schrenkiella parvula HOM05D004367 ORTHO05D004937 2.2e-07 58.9 45 62.2
BcaC04g20419 Brassica carinata HOM05D004367 ORTHO05D004937 2.9e-07 58.5 45 62.2
BolC9t57258H Brassica oleracea HOM05D004367 ORTHO05D004937 2.9e-07 58.5 45 62.2
EL10Ac4g08166 Beta vulgaris HOM05D004367 ORTHO05D004937 3.8e-07 58.2 45 57.8
CiPaw.11G168700 Carya illinoinensis HOM05D004367 ORTHO05D004937 4.9e-07 57.8 45 62.2
Hund22921 Selenicereus undatus HOM05D004367 ORTHO05D004937 8.4e-07 57.0 61 50.8
Sc16g0006960 Simmondsia chinensis HOM05D004367 ORTHO05D004937 8.4e-07 57.0 61 47.5
MBI07_g32654_MAGBIO Magnolia biondii HOM05D004367 ORTHO05D004937 1.4e-06 56.2 51 58.8
Thhalv10013073m.g Eutrema salsugineum HOM05D004367 ORTHO05D004937 1.9e-06 55.8 45 57.8
AUR62029381 Chenopodium quinoa HOM05D004367 ORTHO05D004937 3.2e-06 55.1 45 55.6
PSO210G1788 Papaver somniferum HOM05D004367 ORTHO05D004937 9.3e-06 53.5 50 52.0


User provided reference genes

Program Settings