Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.6e-127 459.5 245 100.0
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 3.0e-110 402.1 242 86.4
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 3.4e-106 388.7 245 85.7
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.5e-101 373.2 243 79.0
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 5.3e-99 364.8 245 78.4
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.0e-97 360.5 249 79.9
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 2.5e-96 355.9 245 74.3
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.1e-91 340.5 233 77.7
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 1.6e-87 326.6 245 65.7
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 3.9e-86 322.0 247 64.8
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 2.0e-85 319.7 245 64.5
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 1.7e-84 316.6 251 66.9
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 6.3e-84 314.7 242 64.5
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 3.1e-83 312.4 245 62.0
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.0e-81 307.4 220 67.3
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 2.2e-81 306.2 238 61.8
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 2.9e-81 305.8 223 68.2
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 5.0e-81 305.1 234 62.0
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 1.1e-80 303.9 246 66.7
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 3.2e-80 302.4 206 70.9
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 5.5e-80 301.6 219 66.2
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 5.5e-80 301.6 240 61.7
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.6e-79 300.1 246 62.2
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.6e-79 300.1 234 62.4
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.1e-79 299.7 220 65.5
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 4.7e-79 298.5 250 61.6
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.0e-78 297.4 208 67.8
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 3.0e-78 295.8 246 60.6
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 8.8e-78 294.3 220 64.5
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 8.8e-78 294.3 245 60.4
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.1e-77 293.9 208 66.3
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 1.5e-77 293.5 218 64.2
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 1.5e-77 293.5 208 68.3
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 4.4e-77 292.0 206 66.0
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 5.7e-77 291.6 246 61.4
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 1.3e-76 290.4 243 59.3
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 1.7e-76 290.0 223 63.7
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 1.4e-75 287.0 222 62.6
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 3.1e-75 285.8 227 63.9
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.1e-75 285.8 215 63.7
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.6e-74 283.5 237 57.8
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 2.0e-74 283.1 215 61.9
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 3.5e-74 282.3 231 59.7
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 4.5e-74 282.0 236 62.7
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 1.5e-72 276.9 246 55.7
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 2.5e-72 276.2 245 64.9
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 5.5e-72 275.0 203 64.5
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 7.2e-72 274.6 215 62.3
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 9.4e-72 274.2 215 60.0
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 9.4e-72 274.2 209 62.7
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.1e-71 273.1 215 61.4
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 4.7e-71 271.9 242 57.9
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 8.0e-71 271.2 215 60.5
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.3e-70 269.6 215 60.0
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.0e-69 266.5 213 61.5
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 2.6e-69 266.2 219 60.7
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 3.3e-69 265.8 239 56.5
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.4e-69 265.4 217 59.0
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.4e-69 265.4 243 56.0
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 5.7e-69 265.0 203 63.1
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 3.7e-68 262.3 205 61.5
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.8e-68 261.9 212 60.4
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 6.3e-68 261.5 205 62.4
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 8.2e-68 261.2 270 53.3
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 8.2e-68 261.2 217 60.4
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 9.1e-67 257.7 210 60.0
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.2e-66 257.3 235 56.6
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 2.0e-66 256.5 214 58.9
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 2.7e-66 256.1 215 59.5
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 2.5e-64 249.6 207 58.9
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 4.2e-64 248.8 207 60.4
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.4e-62 243.8 204 58.8
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 1.4e-59 233.8 207 55.1
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 1.8e-59 233.4 247 51.8
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 2.4e-59 233.0 231 48.5
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 1.7e-57 226.9 272 45.6
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 1.7e-57 226.9 244 49.2
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.9e-57 226.1 208 54.8
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 8.6e-57 224.6 208 54.3
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.1e-56 224.2 208 54.3
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 1.9e-56 223.4 239 47.3
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 2.5e-56 223.0 212 51.4
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 3.2e-56 222.6 210 53.3
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 5.5e-56 221.9 271 45.4
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 3.6e-55 219.2 213 52.1
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.4e-54 217.2 237 52.3
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 4.0e-54 215.7 193 55.4
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 5.2e-54 215.3 208 52.9
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 6.8e-54 214.9 239 46.0
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 8.8e-54 214.5 240 47.5
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 8.8e-54 214.5 240 46.7
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 8.8e-54 214.5 240 47.5
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.2e-53 214.2 270 44.4
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 1.2e-53 214.2 240 45.8
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 1.2e-53 214.2 240 45.8
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 3.4e-53 212.6 238 45.4
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 9.8e-53 211.1 240 45.4
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.7e-52 210.3 204 48.5
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.8e-52 209.5 192 54.7
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 3.7e-52 209.1 246 43.9
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 3.3e-48 196.1 209 47.4
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 1.2e-47 194.1 131 77.1
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 2.1e-47 193.4 210 46.7
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 1.7e-44 183.7 200 49.5
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 2.3e-41 173.3 203 46.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.0e-41 172.9 202 45.0
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 9.5e-40 167.9 199 45.7
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 3.6e-39 166.0 115 67.0
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 6.2e-39 165.2 212 44.3
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-38 164.1 205 45.4
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.4e-38 164.1 139 59.0
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.2e-37 161.0 117 64.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-37 160.2 200 43.0
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 6.0e-34 148.7 190 45.8
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 4.0e-30 136.0 240 37.9
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 2.6e-29 133.3 211 38.9
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 6.4e-28 128.6 153 44.4
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.1e-26 123.6 236 36.4
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.0e-25 121.3 219 37.9
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 1.3e-25 120.9 128 47.7
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 6.6e-25 118.6 227 33.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.5e-24 116.7 213 36.6
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.5e-24 116.7 213 37.1
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 1.3e-20 104.4 228 32.9
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 1.1e-11 74.7 58 55.2
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 1.9e-11 73.9 100 39.0
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 3.2e-11 73.2 56 55.4
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 4.6e-10 69.3 278 25.9
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 1.0e-09 68.2 104 38.5
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 1.3e-09 67.8 104 38.5
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 8.7e-09 65.1 144 29.2
A02p01110 Brassica napus HOM05D005944 ORTHO05D007188 9.0e-06 55.1 33 69.7


User provided reference genes

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