Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.9e-169 599.4 365 100.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 6.8e-143 511.1 363 76.0
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.5e-139 498.8 363 73.0
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 3.5e-139 498.8 368 85.6
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 3.4e-126 455.7 367 68.9
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.3e-125 453.8 364 67.3
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 2.2e-125 453.0 365 68.8
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 4.9e-125 451.8 362 70.4
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.0e-122 442.6 363 71.6
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 8.1e-120 434.5 367 66.8
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 3.8e-117 425.6 375 64.8
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 8.4e-117 424.5 364 75.0
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 2.1e-115 419.9 367 74.4
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 2.2e-109 399.8 364 59.6
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 3.8e-109 399.1 365 59.7
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.4e-108 397.1 365 60.0
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.6e-107 393.7 365 58.4
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 7.9e-107 391.3 364 58.8
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.0e-106 391.0 364 58.8
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.8e-106 390.2 364 58.5
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.3e-106 389.8 363 58.1
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 2.3e-106 389.8 364 60.2
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 8.7e-106 387.9 364 58.2
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.1e-105 387.5 361 58.7
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.9e-105 386.7 363 59.2
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.3e-105 385.6 363 59.0
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 4.3e-105 385.6 365 58.1
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 2.8e-104 382.9 366 57.9
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 3.7e-104 382.5 377 56.0
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.8e-104 382.1 365 58.9
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.4e-103 379.8 382 55.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.1e-103 379.4 364 58.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 3.1e-103 379.4 365 58.1
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.0e-102 376.7 365 58.1
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.6e-102 376.3 364 59.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.4e-102 375.9 364 56.9
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 5.8e-102 375.2 365 58.1
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 5.8e-102 375.2 365 58.1
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 5.8e-102 375.2 361 57.9
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.8e-102 375.2 364 57.1
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.0e-101 374.4 361 57.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.3e-101 374.0 368 56.5
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.9e-101 372.9 365 58.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.8e-101 372.5 380 55.8
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.1e-100 370.9 378 57.7
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.9e-100 370.2 362 58.8
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 2.5e-100 369.8 365 56.4
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 2.5e-100 369.8 361 56.0
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.5e-100 369.8 361 57.6
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 3.2e-100 369.4 364 56.9
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 3.2e-100 369.4 371 56.9
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 9.3e-100 367.9 358 56.4
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 9.3e-100 367.9 359 58.5
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.2e-99 367.5 361 55.1
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.1e-99 366.7 380 55.3
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.1e-99 366.7 356 59.0
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.1e-99 366.7 364 56.3
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 4.6e-99 365.5 364 56.0
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 4.6e-99 365.5 364 56.3
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.3e-98 363.2 369 54.7
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 3.3e-97 359.4 364 55.5
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.7e-97 358.6 364 54.4
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 7.4e-97 358.2 365 55.6
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.3e-96 357.5 364 54.9
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.1e-96 356.7 363 57.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.1e-96 356.7 397 51.6
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 6.2e-96 355.1 366 58.5
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 8.2e-96 354.8 361 57.1
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 8.2e-96 354.8 364 56.3
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.4e-95 354.0 361 56.0
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.8e-95 353.6 383 52.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 3.1e-95 352.8 365 54.2
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 9.0e-95 351.3 381 51.7
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 5.8e-94 348.6 363 53.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.5e-92 343.2 364 53.8
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 9.3e-92 341.3 369 54.7
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 9.3e-92 341.3 367 53.7
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.6e-91 339.0 360 57.5
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 8.7e-90 334.7 365 53.7
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 7.4e-89 331.6 423 47.3
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.1e-87 327.8 366 51.6
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.4e-87 326.6 365 52.1
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.3e-87 325.5 371 52.8
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 6.9e-87 325.1 340 55.9
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 9.0e-87 324.7 372 54.3
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.2e-85 320.1 369 51.8
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 3.8e-85 319.3 394 49.0
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-84 317.8 343 58.3
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.5e-84 316.6 370 51.1
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.1e-83 313.5 281 63.0
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 4.6e-83 312.4 366 54.9
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 6.1e-83 312.0 365 51.2
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.8e-82 310.5 383 49.9
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 2.3e-82 310.1 376 50.3
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 3.9e-82 309.3 341 52.5
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-81 307.8 363 58.1
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.3e-81 306.2 363 57.9
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.7e-80 303.9 388 48.2
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.7e-80 303.9 389 48.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.2e-80 303.5 387 49.4
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 2.8e-80 303.1 388 48.2
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-79 301.2 382 53.1
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.8e-79 300.4 388 49.7
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 2.4e-79 300.1 387 54.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 2.4e-79 300.1 386 53.1
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 2.4e-79 300.1 387 54.5
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 3.1e-79 299.7 388 47.9
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 5.3e-79 298.9 435 44.6
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.7e-77 293.9 371 46.4
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 3.8e-77 292.7 384 54.4
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.0e-74 284.6 387 51.7
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.1e-73 281.2 387 50.4
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 5.3e-71 272.3 361 46.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 5.3e-71 272.3 357 47.3
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.3e-69 267.7 336 56.5
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.8e-63 247.3 212 62.7
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 9.1e-63 245.0 214 62.1
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 2.5e-60 236.9 396 38.4
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.3e-58 230.3 189 65.1
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 4.2e-52 209.5 437 35.5
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.7e-51 206.8 364 40.1
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.4e-47 193.7 347 37.2
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 5.0e-37 159.5 283 41.0
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.1e-36 158.3 363 34.4
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.5e-33 147.9 211 43.1
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 7.5e-33 145.6 106 67.0
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 8.3e-32 142.1 106 67.9
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.7e-29 134.4 159 52.2
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 9.9e-17 92.0 95 50.5
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-15 88.2 67 62.7
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.3e-13 80.9 56 75.0
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 2.3e-13 80.9 399 24.8
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.1e-12 78.6 433 24.9
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.8e-11 73.9 258 40.7
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 8.1e-11 72.4 56 67.9
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 4.0e-10 70.1 50 64.0
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 7.6e-09 65.9 80 46.2


User provided reference genes

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