Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 7.4e-264 913.3 451 100.0
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.8e-222 775.8 449 86.9
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 2.7e-218 761.9 436 86.5
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.8e-217 759.2 451 85.1
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 4.6e-189 664.8 418 78.2
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 1.4e-185 653.3 452 74.1
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 1.2e-181 640.2 444 72.1
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 1.5e-179 633.3 444 71.4
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 2.5e-179 632.5 446 71.1
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 6.2e-178 627.9 446 71.5
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 2.3e-177 625.9 446 71.7
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 2.7e-149 532.7 432 59.7
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.4e-142 510.4 429 58.3
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 7.1e-142 508.1 434 56.2
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 1.6e-141 506.9 436 58.5
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 1.6e-141 506.9 437 57.9
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 1.1e-139 500.7 431 56.8
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.9e-139 500.0 435 57.5
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.1e-138 496.5 437 57.2
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 3.7e-138 495.7 420 59.0
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 8.2e-138 494.6 420 57.1
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 3.4e-136 489.2 429 55.9
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 4.5e-136 488.8 428 55.8
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 1.0e-135 487.6 431 56.1
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.3e-135 487.3 436 53.9
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 4.9e-135 485.3 432 55.6
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 6.5e-135 485.0 427 54.3
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 1.8e-132 476.9 419 54.9
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 3.0e-132 476.1 423 54.8
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 1.3e-130 470.7 461 53.4
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.2e-130 469.9 433 55.0
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 2.2e-130 469.9 430 55.6
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 4.8e-130 468.8 430 54.4
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 9.0e-129 464.5 427 53.6
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 1.2e-128 464.2 413 54.0
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 5.9e-128 461.8 411 56.4
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.3e-127 460.7 411 56.2
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 5.5e-126 455.3 408 54.7
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 7.2e-126 454.9 423 52.5
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 2.1e-125 453.4 410 54.6
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 4.6e-125 452.2 416 55.5
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 2.8e-122 443.0 425 50.1
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 1.4e-121 440.7 447 51.2
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 6.9e-121 438.3 425 49.9
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 1.2e-120 437.6 426 50.2
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 1.5e-120 437.2 425 49.4
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 2.0e-120 436.8 472 48.9
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.0e-119 434.5 428 49.5
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 1.3e-119 434.1 465 48.6
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 3.8e-119 432.6 425 48.7
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 3.2e-118 429.5 428 49.5
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 4.7e-117 425.6 442 47.5
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 4.7e-117 425.6 428 49.3
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 7.9e-117 424.9 427 48.2
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 2.3e-116 423.3 420 48.1
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 7.4e-115 418.3 355 56.3
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 2.8e-114 416.4 417 49.9
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 1.1e-113 414.5 423 50.4
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 2.4e-113 413.3 451 47.0
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 3.1e-113 412.9 426 48.6
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 9.1e-113 411.4 444 47.5
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 1.2e-112 411.0 313 61.0
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 2.0e-112 410.2 434 46.8
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 1.3e-111 407.5 427 47.1
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 4.2e-110 402.5 433 49.0
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 5.5e-110 402.1 311 62.7
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 7.2e-110 401.7 457 46.4
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 2.7e-109 399.8 429 46.2
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 1.1e-107 394.4 436 48.4
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 1.1e-105 387.9 510 40.8
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 3.1e-105 386.3 417 47.0
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 3.1e-105 386.3 453 46.4
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 3.5e-104 382.9 359 51.5
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 2.2e-103 380.2 409 46.9
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 1.5e-102 377.5 410 47.6
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 3.6e-101 372.9 381 52.2
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 4.4e-99 365.9 420 44.5
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 5.7e-99 365.5 439 44.2
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 9.7e-99 364.8 412 45.1
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 4.8e-98 362.5 312 55.1
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 1.6e-96 357.5 439 45.1
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 2.0e-96 357.1 409 46.9
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 2.2e-95 353.6 368 50.8
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 2.3e-92 343.6 429 45.9
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 1.5e-83 314.3 443 41.8
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 4.4e-83 312.8 308 48.7
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 2.8e-77 293.5 265 54.3
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 8.9e-76 288.5 408 40.0
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.6e-75 287.0 453 40.4
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 5.8e-75 285.8 453 40.2
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 1.4e-73 281.2 431 39.9
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.0e-73 278.9 445 39.8
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 1.2e-72 278.1 404 40.3
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 1.6e-72 277.7 404 40.3
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.6e-72 277.7 459 39.9
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 1.0e-71 275.0 284 47.5
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.1e-68 265.0 229 57.6
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.5e-67 261.2 415 42.2
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 4.9e-66 256.1 303 43.6
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.0e-64 249.2 463 37.8
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 9.2e-57 225.3 205 54.1
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 1.7e-55 221.1 203 52.7
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.3e-54 216.9 237 46.8
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 3.4e-51 206.8 226 47.8
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 4.4e-51 206.5 324 41.7
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.6e-48 198.0 400 31.0
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 1.0e-47 195.3 448 29.2
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 1.8e-44 184.5 218 47.2
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 1.1e-41 175.3 306 35.6
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 3.5e-40 170.2 199 43.2
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 6.6e-39 166.0 234 44.9
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.6e-39 166.0 234 44.9
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 8.7e-39 165.6 342 32.7
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 7.3e-38 162.5 165 49.7
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 9.6e-38 162.2 151 53.0
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 9.0e-36 155.6 337 31.8
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 4.5e-35 153.3 154 49.4
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.7e-34 151.4 136 56.6
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.1e-30 138.7 140 45.0
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 2.6e-27 127.5 264 29.9
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 1.3e-26 125.2 290 29.3
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 3.2e-25 120.6 103 54.4
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 2.3e-23 114.4 88 61.4
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 5.1e-23 113.2 117 49.6
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.4e-20 104.4 135 41.5
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 9.0e-20 102.4 108 52.8
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 1.5e-19 101.7 67 68.7
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.6e-11 74.3 112 35.7
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 1.4e-09 68.6 91 44.0
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.9e-08 62.8 63 47.6
FAN24G2079 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.4e-07 62.0 56 55.4
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 3.0e-07 60.8 83 42.2


User provided reference genes

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