Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 2.3e-215 751.9 369 100.0
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 4.0e-191 671.4 368 87.5
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.7e-187 658.7 368 87.0
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 1.1e-156 557.0 369 72.9
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 4.2e-156 555.1 366 73.5
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 8.7e-154 547.4 364 70.9
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 8.1e-152 540.8 368 68.5
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 3.1e-151 538.9 310 83.9
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 5.8e-150 534.6 369 70.2
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 2.9e-149 532.3 365 69.6
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 8.4e-149 530.8 368 70.4
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 1.4e-148 530.0 369 68.6
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.6e-147 526.6 368 69.6
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 3.0e-146 522.3 358 69.3
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 2.6e-142 509.2 373 66.2
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 7.6e-142 507.7 373 66.2
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 2.9e-141 505.8 359 68.2
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.8e-141 505.4 365 68.2
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 2.7e-139 499.2 358 67.0
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.1e-136 489.6 359 66.0
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 2.4e-135 486.1 369 66.1
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 6.9e-135 484.6 365 64.7
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 4.5e-134 481.9 365 64.7
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.2e-133 479.6 362 63.5
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 1.6e-131 473.4 347 64.3
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 6.7e-130 468.0 345 63.8
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 7.4e-129 464.5 345 63.5
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.7e-128 462.2 345 63.5
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 3.7e-128 462.2 340 63.2
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 8.2e-128 461.1 345 62.9
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.8e-127 459.9 347 60.8
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.1e-127 459.1 362 61.3
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 3.1e-127 459.1 347 65.1
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 9.0e-127 457.6 341 63.0
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.5e-126 456.8 347 62.5
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 5.9e-126 454.9 361 60.7
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.3e-125 453.8 361 60.4
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 2.9e-125 452.6 353 62.3
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 9.4e-124 447.6 340 62.6
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.2e-123 447.2 361 59.8
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 2.1e-123 446.4 347 62.0
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 3.6e-123 445.7 361 59.3
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 7.9e-123 444.5 366 58.2
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.0e-122 442.6 316 66.8
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 8.8e-122 441.0 340 61.5
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 8.8e-122 441.0 338 62.1
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 3.3e-121 439.1 365 56.7
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 5.7e-121 438.3 362 60.8
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 1.3e-120 437.2 366 56.3
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.1e-119 432.6 353 57.8
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.5e-118 428.7 339 59.3
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 5.9e-118 428.3 361 56.2
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 7.7e-118 427.9 309 63.8
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.7e-117 426.8 388 56.2
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 5.0e-117 425.2 362 55.0
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 5.0e-117 425.2 365 56.2
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 8.5e-117 424.5 317 61.5
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 8.5e-117 424.5 362 54.4
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.1e-116 424.1 360 57.2
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 5.5e-116 421.8 340 59.7
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 9.4e-116 421.0 303 63.7
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 3.6e-115 419.1 341 57.2
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 6.1e-115 418.3 339 57.2
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 7.9e-115 417.9 351 56.7
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 1.4e-114 417.2 361 55.4
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.8e-114 416.8 358 57.0
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 3.0e-114 416.0 314 62.1
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.1e-113 414.1 361 55.1
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 9.7e-113 411.0 360 55.0
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 9.7e-113 411.0 310 61.9
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 2.8e-112 409.5 375 56.5
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 3.1e-111 406.0 359 54.9
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.3e-109 400.6 336 56.2
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 5.0e-109 398.7 367 53.7
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.9e-108 396.7 349 55.0
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.6e-107 393.7 368 53.5
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 2.1e-107 393.3 323 57.0
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.0e-107 391.3 367 54.2
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.4e-106 390.6 343 54.5
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.0e-106 389.4 339 54.6
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 3.0e-106 389.4 353 54.1
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 3.9e-106 389.0 341 54.8
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 5.2e-106 388.7 342 55.0
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 5.7e-105 385.2 340 55.0
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 1.3e-104 384.0 356 52.8
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 4.8e-104 382.1 351 53.0
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.1e-103 380.9 340 54.7
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.8e-103 380.2 374 52.9
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 5.3e-103 378.6 364 52.2
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 7.0e-103 378.3 361 54.0
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 9.1e-103 377.9 343 54.8
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.2e-102 377.5 348 53.7
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 2.6e-102 376.3 343 54.8
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.6e-102 376.3 367 52.3
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 4.5e-102 375.6 372 51.1
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 1.0e-101 374.4 372 50.8
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 2.2e-101 373.2 361 53.7
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 2.2e-101 373.2 340 54.1
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 2.2e-101 373.2 360 50.3
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.1e-100 370.9 368 50.3
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 3.6e-99 365.9 366 51.6
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 8.0e-99 364.8 359 51.0
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 5.2e-98 362.1 367 51.0
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 5.2e-98 362.1 367 51.0
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 2.0e-97 360.1 366 50.0
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.4e-97 359.4 349 53.6
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 4.4e-97 359.0 254 65.0
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.5e-97 358.2 363 49.9
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.1e-95 352.4 363 48.8
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 5.3e-95 352.1 404 45.3
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.2e-94 350.9 335 49.9
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 2.2e-93 346.7 269 60.2
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.1e-92 344.4 340 50.0
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 2.5e-92 343.2 288 56.6
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 5.5e-92 342.0 341 49.6
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 5.2e-90 335.5 340 50.3
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 6.8e-90 335.1 317 51.4
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.2e-89 334.3 355 49.3
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.5e-89 334.0 340 50.3
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.0e-89 333.6 350 48.3
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 2.0e-89 333.6 374 45.2
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 3.4e-89 332.8 354 47.7
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.7e-88 330.5 340 49.4
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 6.3e-88 328.6 340 47.9
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 7.0e-87 325.1 354 46.0
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 2.0e-86 323.6 271 55.7
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 4.5e-86 322.4 354 45.8
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 3.8e-85 319.3 287 51.6
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 5.0e-85 318.9 354 45.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.1e-84 317.8 360 47.5
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.5e-84 316.6 292 54.1
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 5.5e-84 315.5 360 47.5
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 3.0e-82 309.7 361 46.8
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 3.0e-82 309.7 361 46.8
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 5.2e-82 308.9 358 46.1
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.5e-81 307.4 357 44.3
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.4e-79 300.8 311 46.3
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 5.9e-78 295.4 241 58.1
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 5.9e-78 295.4 328 44.5
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.1e-75 285.4 342 45.6
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.5e-73 280.8 324 45.7
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 7.8e-70 268.5 323 44.0
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 9.5e-68 261.5 333 40.8
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 6.2e-67 258.8 292 46.9
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.9e-64 249.2 342 40.6
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.3e-64 248.4 339 40.1
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.4e-63 246.9 342 40.6
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 2.7e-62 243.4 290 44.1
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 5.6e-60 235.7 215 53.0
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.1e-58 229.9 315 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 1.7e-56 224.2 341 36.1
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.4e-55 221.1 323 39.0
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 4.6e-54 216.1 273 36.6
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 8.6e-53 211.8 209 48.8
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 7.3e-52 208.8 302 36.4
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.0e-50 203.0 191 47.6
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 5.2e-50 202.6 320 35.3
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 5.2e-50 202.6 320 35.3
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 8.9e-50 201.8 295 35.9
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 9.0e-42 175.3 137 62.8
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.0e-41 174.1 177 51.4
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 7.3e-36 155.6 125 56.8
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.2e-33 148.3 118 63.6
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 2.0e-33 147.5 140 50.0
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.2e-31 140.2 164 45.1
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.8e-29 134.4 128 51.6
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.3e-28 130.2 86 64.0
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 5.3e-26 122.9 89 62.9
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 9.0e-26 122.1 261 31.0
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.5e-25 121.3 164 37.2
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 4.1e-18 96.7 73 61.6
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 5.0e-16 89.7 67 61.2
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 9.3e-15 85.5 103 41.7
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 1.1e-10 72.0 214 25.2
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 6.1e-06 56.2 66 48.5


User provided reference genes

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