Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 0.0e+00 1075.1 688 100.0
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 4.0e-269 931.4 681 89.6
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 6.8e-269 930.6 685 88.2
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 3.7e-259 898.3 681 83.4
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 6.4e-259 897.5 699 81.0
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 4.0e-253 878.2 676 84.8
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.1e-245 853.6 684 79.1
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 7.1e-242 840.9 690 81.6
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 6.0e-241 837.8 661 83.1
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 2.4e-237 825.9 680 80.9
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.7e-235 819.7 685 80.4
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 3.3e-231 805.4 706 77.5
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.0e-224 783.9 678 73.2
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 5.1e-224 781.6 686 75.9
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 6.2e-222 774.6 687 73.8
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 8.1e-222 774.2 686 75.4
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.2e-218 762.3 669 75.9
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 6.9e-213 744.6 678 73.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.3e-211 740.3 675 75.1
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.3e-211 740.3 692 71.8
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.2e-211 739.6 678 69.6
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.9e-211 738.4 678 73.5
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.5e-210 736.1 677 73.0
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 3.2e-210 735.7 681 70.6
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.2e-209 733.8 692 62.7
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.1e-209 733.0 672 70.8
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.1e-209 733.0 623 78.0
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.3e-208 730.3 675 71.1
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 5.1e-208 728.4 676 73.4
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.1e-207 727.2 687 71.8
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 3.7e-206 722.2 671 69.7
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 4.8e-206 721.8 692 70.8
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 4.1e-205 718.8 687 70.7
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.2e-204 717.2 686 70.1
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 3.8e-203 712.2 677 72.2
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 5.0e-203 711.8 700 72.6
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.5e-202 709.5 693 69.6
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.5e-202 709.5 680 69.4
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.5e-202 708.4 679 68.6
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.6e-201 706.8 711 62.7
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 3.6e-201 705.7 681 72.0
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.6e-201 705.7 569 75.9
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 6.1e-201 704.9 679 66.7
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 5.1e-200 701.8 679 71.3
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 6.7e-200 701.4 672 73.8
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.9e-199 699.9 683 71.3
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.1e-197 692.6 697 71.0
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 4.1e-197 692.2 690 72.9
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 5.3e-197 691.8 676 71.0
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 5.3e-197 691.8 687 71.2
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 9.1e-197 691.0 686 71.1
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.5e-196 690.3 669 67.9
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 3.4e-196 689.1 677 70.8
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.9e-196 688.3 666 71.8
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 7.7e-196 688.0 659 68.6
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.4e-194 683.7 699 67.5
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.2e-194 682.6 689 65.7
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 3.2e-194 682.6 708 66.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 9.4e-194 681.0 677 67.5
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.6e-193 680.2 664 68.5
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 3.6e-193 679.1 672 68.2
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 4.7e-193 678.7 672 68.2
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 4.7e-193 678.7 672 68.2
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 4.7e-193 678.7 675 67.1
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 6.1e-193 678.3 669 68.0
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 7.9e-193 677.9 675 69.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.0e-192 677.6 673 68.1
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.9e-192 675.6 664 68.1
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 3.9e-192 675.6 671 68.0
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 3.9e-192 675.6 671 68.0
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 3.9e-192 675.6 671 67.7
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 6.7e-192 674.9 677 69.7
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 8.8e-192 674.5 681 66.1
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.6e-191 672.9 672 67.3
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.3e-190 670.6 673 67.5
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.8e-190 668.7 674 67.1
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 4.8e-190 668.7 662 68.7
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 9.1e-189 664.5 670 66.7
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 9.1e-189 664.5 680 65.7
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.2e-188 664.1 676 66.0
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.0e-188 663.3 682 69.8
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.7e-187 660.2 660 66.8
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.8e-187 659.1 668 66.5
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 5.0e-187 658.7 672 65.9
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 8.5e-187 657.9 667 66.9
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 3.2e-186 656.0 662 68.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 5.5e-186 655.2 681 69.5
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.2e-185 654.1 672 62.5
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 4.7e-185 652.1 679 65.2
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 4.7e-185 652.1 675 65.8
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.4e-184 650.6 574 72.0
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.3e-184 649.8 687 60.4
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 3.9e-184 649.0 680 65.7
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-183 647.5 682 69.2
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.3e-183 646.0 654 66.1
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 3.3e-183 646.0 699 67.4
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.4e-183 645.6 662 69.3
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.7e-182 643.7 551 73.0
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.4e-181 640.6 666 58.9
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 4.5e-180 635.6 730 60.7
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.9e-178 630.2 610 72.8
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.0e-176 624.4 679 66.4
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.8e-176 621.3 667 57.6
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.2e-174 616.7 634 65.9
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.8e-171 605.9 649 62.7
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.7e-169 599.7 670 61.3
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.0e-168 597.8 536 79.3
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.4e-165 586.6 613 68.7
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.7e-163 580.5 586 68.4
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 8.6e-163 578.2 670 62.1
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 7.3e-154 548.5 543 68.3
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.0e-151 540.4 677 63.8
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.1e-144 518.1 615 57.2
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 7.8e-140 501.9 526 68.3
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 3.0e-139 500.0 542 62.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.0e-139 500.0 686 49.9
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 3.3e-138 496.5 688 51.5
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.1e-137 493.8 732 57.8
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 3.5e-132 476.5 537 63.7
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.2e-129 468.0 603 50.9
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 8.1e-129 465.3 507 66.1
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.9e-117 427.6 666 46.2
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.4e-103 380.2 511 51.7
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.8e-103 379.4 256 73.4
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 8.4e-102 375.6 387 68.5
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.2e-101 373.2 307 66.1
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.7e-100 370.5 314 63.4
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.0e-99 368.6 454 45.8
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.3e-98 363.2 320 72.2
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.3e-94 351.7 477 59.5
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 4.1e-88 330.1 476 53.8
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.9e-86 323.9 221 85.1
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 5.7e-74 283.1 306 51.6
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.9e-70 270.8 285 75.8
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.8e-70 270.4 175 74.9
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.9e-69 268.1 286 54.9
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 2.8e-65 254.2 243 52.7
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 2.8e-65 254.2 319 61.8
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 4.1e-64 250.4 216 81.0
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 2.2e-62 244.6 344 44.2
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 7.0e-56 223.0 138 76.8
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-52 211.5 288 44.8
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 4.5e-47 193.7 111 83.8
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.3e-46 192.2 226 49.1
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 7.2e-45 186.4 111 81.1
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.2e-44 185.7 289 67.1
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 8.3e-41 172.9 85 92.9
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.8e-40 171.8 167 55.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-32 145.6 323 50.2
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.2e-32 144.4 195 50.8
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-30 138.7 102 68.6
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 8.6e-30 136.3 111 64.0
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.9e-29 135.2 102 69.6
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.3e-29 134.0 95 69.5
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.2e-28 132.5 131 48.9
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 8.9e-19 99.8 69 66.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.6e-18 98.2 556 25.7
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.2e-17 95.1 172 38.4
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.4e-16 91.7 527 28.3
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 2.7e-15 88.2 74 59.5
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.6e-15 87.4 68 63.2
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 3.0e-14 84.7 67 58.2
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 5.1e-14 84.0 68 58.8
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 7.3e-13 80.1 158 34.2
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.1e-12 78.6 195 29.2
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.6e-12 77.8 63 58.7
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 6.2e-12 77.0 66 53.0
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.2e-10 72.8 54 61.1
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.7e-09 68.9 65 52.3
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 1.1e-08 66.2 55 56.4
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.1e-08 66.2 116 37.9
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.2e-07 62.8 59 50.8
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 1.6e-07 62.4 68 52.9
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 4.6e-07 60.8 49 55.1
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 7.8e-07 60.1 44 56.8
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 3.0e-06 58.2 51 54.9
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 5.1e-06 57.4 38 60.5


User provided reference genes

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