Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14249 Trifolium pratense HOM05D001558 ORTHO05D005808 6.7e-84 313.9 153 100.0
TPR.G22654 Trifolium pratense HOM05D001558 ORTHO05D005808 1.6e-29 133.3 75 82.7
Glyma.02G201300 Glycine max HOM05D001558 ORTHO05D005808 1.5e-22 110.2 66 81.8
Medtr1g059610 Medicago truncatula HOM05D001558 ORTHO05D005808 1.9e-22 109.8 66 80.3
TPR.G14787 Trifolium pratense HOM05D001558 ORTHO05D005808 1.9e-22 109.8 66 80.3
Glyma.10G075300 Glycine max HOM05D001558 ORTHO05D005808 3.3e-22 109.0 66 80.3
Phvul.001G192300 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 4.3e-22 108.6 66 78.8
arahy.Tifrunner.gnm1.ann1.VDQ48T Arachis hypogaea HOM05D001558 ORTHO05D005808 5.6e-22 108.2 66 78.8
arahy.Tifrunner.gnm1.ann1.XHST8G Arachis hypogaea HOM05D001558 ORTHO05D005808 5.6e-22 108.2 66 78.8
Psat6g080760 Pisum sativum HOM05D001558 ORTHO05D005808 7.3e-22 107.8 66 77.3
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 7.3e-22 107.8 66 78.8
Ca_24224_v3 Cicer arietinum L. HOM05D001558 ORTHO05D005808 1.2e-21 107.1 66 78.8
Lj5g0025907 Lotus japonicus HOM05D001558 ORTHO05D005808 1.2e-21 107.1 66 77.3
Lalb_Chr20g0111601 Lupinus albus HOM05D001558 ORTHO05D005808 4.7e-21 105.1 66 75.8
Lalb_Chr25g0288211 Lupinus albus HOM05D001558 ORTHO05D005808 8.1e-21 104.4 66 74.2
Phvul.007G153100 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 1.1e-20 104.0 66 74.2
CiPaw.10G012400 Carya illinoinensis HOM05D001558 ORTHO05D005808 4.0e-20 102.1 66 72.7
Lj3A1009G52 Lonicera japonica HOM05D001558 ORTHO05D005808 4.0e-20 102.1 66 72.7
Glyma.19G196000 Glycine max HOM05D001558 ORTHO05D005808 5.2e-20 101.7 66 74.2
Atru.chr8.1448 Acer truncatum HOM05D001558 ORTHO05D005808 8.9e-20 100.9 66 71.2
CANSAT64G1174 Cannabis sativa HOM05D001558 ORTHO05D005808 8.9e-20 100.9 66 72.7
CiPaw.09G017100 Carya illinoinensis HOM05D001558 ORTHO05D005808 8.9e-20 100.9 66 72.7
Cc06_g06160 Coffea canephora HOM05D001558 ORTHO05D005808 8.9e-20 100.9 66 71.2
Glyma.03G198100 Glycine max HOM05D001558 ORTHO05D005808 8.9e-20 100.9 66 72.7
COL.COLO4_29672 Corchorus olitorius HOM05D001558 ORTHO05D005808 1.2e-19 100.5 66 71.2
Sc20g0006410 Simmondsia chinensis HOM05D001558 ORTHO05D005808 1.2e-19 100.5 66 71.2
Ciclev10011021m.g Citrus clementina HOM05D001558 ORTHO05D005808 1.5e-19 100.1 66 71.2
Manes.09G052300 Manihot esculenta HOM05D001558 ORTHO05D005808 1.5e-19 100.1 66 72.7
Manes.08G028400 Manihot esculenta HOM05D001558 ORTHO05D005808 2.0e-19 99.8 66 71.2
TWI77G0440 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 2.0e-19 99.8 66 72.7
HPP92_001984 Vanilla planifolia HOM05D001558 ORTHO05D005808 2.0e-19 99.8 66 69.7
GSVIVG01033891001 Vitis vinifera HOM05D001558 ORTHO05D005808 2.0e-19 99.8 66 69.7
CsaV3_6G040850 Cucumis sativus L. HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 69.7
FvH4_6g19470 Fragaria vesca HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 71.2
FAN02G4309 Fragaria x ananassa HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 71.2
FAN05G0475 Fragaria x ananassa HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 71.2
FAN05G1606 Fragaria x ananassa HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 71.2
FAN09G3352 Fragaria x ananassa HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 71.2
FAN14G2159 Fragaria x ananassa HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 71.2
Gohir.A11G318700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 69.7
Psat2g117440 Pisum sativum HOM05D001558 ORTHO05D005808 2.6e-19 99.4 77 63.6
Sabra06G0160700 Salix brachista HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 71.2
Sp3g09780 Schrenkiella parvula HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 69.7
Sed0010659 Sechium edule HOM05D001558 ORTHO05D005808 2.6e-19 99.4 66 69.7
CSS0019098 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 3.4e-19 99.0 66 72.7
MD12G1030800 Malus domestica HOM05D001558 ORTHO05D005808 3.4e-19 99.0 66 71.2
MD14G1031300 Malus domestica HOM05D001558 ORTHO05D005808 3.4e-19 99.0 66 71.2
RcHm_v2.0_Chr3g0474801 Rosa chinensis HOM05D001558 ORTHO05D005808 3.4e-19 99.0 66 71.2
BcaB04g18647 Brassica carinata HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 68.2
A05p37790 Brassica napus HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 68.2
BraA05t22574Z Brassica rapa HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 68.2
AUR62006225 Chenopodium quinoa HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 69.7
AUR62036988 Chenopodium quinoa HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 69.7
MELO3C024563.2 Cucumis melo HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 69.7
Gohir.D11G337900 Gossypium hirsutum HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 69.7
Gorai.007G367900 Gossypium raimondii HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 69.7
Prupe.7G101600 Prunus persica HOM05D001558 ORTHO05D005808 4.4e-19 98.6 66 71.2
Actinidia05402 Actinidia chinensis HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 71.2
AL3G23090 Arabidopsis lyrata HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
AT3G11540 Arabidopsis thaliana HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
BcaB06g25610 Brassica carinata HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
BcaC01g04107 Brassica carinata HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
A03p37150 Brassica napus HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
C03p45000 Brassica napus HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
BolC3t16760H Brassica oleracea HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
BraA03t12875Z Brassica rapa HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
Carub.0003s1086 Capsella rubella HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
Os08g0559300 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 69.7
THA.LOC104809967 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 5.8e-19 98.2 66 68.2
EL10Ac7g16875 Beta vulgaris HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 69.7
ECA236G3012 Erigeron canadensis HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 68.2
Eucgr.K02568 Eucalyptus grandis HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 68.2
Thhalv10020017m.g Eutrema salsugineum HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 66.7
QL07p038153 Quercus lobata HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 69.7
Rhsim03G0070000 Rhododendron simsii HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 69.7
TWI74G0547 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 71.2
TAR369G0994 Trochodendron aralioides HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 69.7
TAR623G1089 Trochodendron aralioides HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 69.7
vmacro07436 Vaccinium macrocarpon HOM05D001558 ORTHO05D005808 7.5e-19 97.8 66 69.7
CARHR086090 Cardamine hirsuta HOM05D001558 ORTHO05D005808 9.8e-19 97.4 66 68.2
Duzib093G1606 Durio zibethinus HOM05D001558 ORTHO05D005808 9.8e-19 97.4 66 69.7
Duzib106G1253 Durio zibethinus HOM05D001558 ORTHO05D005808 9.8e-19 97.4 66 69.7
Thecc.05G095300 Theobroma cacao HOM05D001558 ORTHO05D005808 9.8e-19 97.4 66 69.7
Dinv21169 Davidia involucrata HOM05D001558 ORTHO05D005808 1.3e-18 97.1 66 69.7
PSO339G4154 Papaver somniferum HOM05D001558 ORTHO05D005808 1.3e-18 97.1 66 69.7
PSO384G0942 Papaver somniferum HOM05D001558 ORTHO05D005808 1.3e-18 97.1 66 69.7
Potri.006G208900 Populus trichocarpa HOM05D001558 ORTHO05D005808 1.3e-18 97.1 66 68.2
THA.LOC104816601 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 1.3e-18 97.1 66 66.7
Zm00001eb039370 Zea mays HOM05D001558 ORTHO05D005808 1.3e-18 97.1 66 68.2
Actinidia03911 Actinidia chinensis HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 69.7
Actinidia04015 Actinidia chinensis HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 69.7
Ah.02g111800 Amaranthus hybridus HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 68.2
BcaC05g29357 Brassica carinata HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 66.7
C05p56410 Brassica napus HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 66.7
BolC5t34308H Brassica oleracea HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 66.7
Dinv31718 Davidia involucrata HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 69.7
Peaxi162Scf00069g00320 Petunia axillaris HOM05D001558 ORTHO05D005808 1.7e-18 96.7 66 66.7
Sabra16G0078200 Salix brachista HOM05D001558 ORTHO05D005808 2.2e-18 96.3 54 81.5
Aa31LG3G4940 Aethionema arabicum HOM05D001558 ORTHO05D005808 2.9e-18 95.9 66 63.6
ATR0820G233 Amborella trichopoda HOM05D001558 ORTHO05D005808 2.9e-18 95.9 66 68.2
MBI05_g03435_MAGBIO Magnolia biondii HOM05D001558 ORTHO05D005808 2.9e-18 95.9 66 66.7
Aqoxy4G02724 Aquilegia oxysepala HOM05D001558 ORTHO05D005808 3.7e-18 95.5 54 77.8
HanXRQChr06g0176131 Helianthus annuus HOM05D001558 ORTHO05D005808 3.7e-18 95.5 66 66.7
Lsat_1_v5_gn_8_74960 Lactuca sativa HOM05D001558 ORTHO05D005808 3.7e-18 95.5 66 66.7
Gohir.A01G204700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 4.9e-18 95.1 66 66.7
Gohir.D01G194100 Gossypium hirsutum HOM05D001558 ORTHO05D005808 4.9e-18 95.1 66 66.7
Gorai.002G238200 Gossypium raimondii HOM05D001558 ORTHO05D005808 4.9e-18 95.1 66 66.7
Oeu047838.2 Olea europaea HOM05D001558 ORTHO05D005808 4.9e-18 95.1 66 69.7
Potri.016G075700 Populus trichocarpa HOM05D001558 ORTHO05D005808 4.9e-18 95.1 54 79.6
CAN.G397.87 Capsicum annuum HOM05D001558 ORTHO05D005808 6.4e-18 94.7 66 65.2
CDE11G0510 Ceratophyllum demersum HOM05D001558 ORTHO05D005808 6.4e-18 94.7 66 66.7
Nitab4.5_0000573g0160 Nicotiana tabacum HOM05D001558 ORTHO05D005808 6.4e-18 94.7 66 65.2
Solyc09g010180.3 Solanum lycopersicum HOM05D001558 ORTHO05D005808 6.4e-18 94.7 66 65.2
Sopen09g004920 Solanum pennellii HOM05D001558 ORTHO05D005808 6.4e-18 94.7 66 65.2
PGSC0003DMG400008939 Solanum tuberosum HOM05D001558 ORTHO05D005808 6.4e-18 94.7 66 65.2
MSTRG.19276 Avicennia marina HOM05D001558 ORTHO05D005808 8.3e-18 94.4 66 66.7
DCAR_008674 Daucus carota HOM05D001558 ORTHO05D005808 8.3e-18 94.4 64 68.8
Oeu007200.1 Olea europaea HOM05D001558 ORTHO05D005808 8.3e-18 94.4 66 69.7
TPR.G19283 Trifolium pratense HOM05D001558 ORTHO05D000037 8.3e-18 94.4 66 69.7
CBR_g30524 Chara braunii HOM05D001558 ORTHO05D000048 1.1e-17 94.0 66 66.7
DCAR_012896 Daucus carota HOM05D001558 ORTHO05D005808 1.1e-17 94.0 66 65.2
SHI12376 Sapria himalayana HOM05D001558 ORTHO05D005808 1.1e-17 94.0 66 66.7
HanXRQChr05g0133061 Helianthus annuus HOM05D001558 ORTHO05D005808 1.4e-17 93.6 66 66.7
PGR142G1086 Punica granatum HOM05D001558 ORTHO05D005808 1.4e-17 93.6 66 66.7
Migut.J01002 Erythranthe guttata HOM05D001558 ORTHO05D005808 1.9e-17 93.2 66 65.2
Mapoly0020s0107 Marchantia polymorpha HOM05D001558 ORTHO05D005808 1.9e-17 93.2 66 65.2
Nn6g34815 Nelumbo nucifera HOM05D001558 ORTHO05D005808 1.9e-17 93.2 66 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5709 Anthoceros agrestis HOM05D001558 ORTHO05D005808 2.4e-17 92.8 54 74.1
SGA_v2.0_scaffold13G06695 Striga asiatica HOM05D001558 ORTHO05D005808 2.4e-17 92.8 66 65.2
TPR.G28039 Trifolium pratense HOM05D001558 ORTHO05D005808 3.2e-17 92.4 67 70.1
SMO334G0063 Selaginella moellendorffii HOM05D001558 ORTHO05D005808 1.2e-16 90.5 66 65.2
SEGI_01931 Sequoiadendron giganteum HOM05D001558 ORTHO05D005808 1.2e-16 90.5 66 60.6
unitig_744.g24703 Utricularia gibba HOM05D001558 ORTHO05D005808 1.6e-16 90.1 63 66.7
Pp3c2_30810 Physcomitrium patens HOM05D001558 ORTHO05D005808 2.7e-16 89.4 54 70.4
Pp3c1_2450 Physcomitrium patens HOM05D001558 ORTHO05D005808 2.3e-15 86.3 54 68.5
Pp3c1_2460 Physcomitrium patens HOM05D001558 ORTHO05D005808 2.3e-15 86.3 54 68.5
TPR.G5707 Trifolium pratense HOM05D001558 ORTHO05D005808 4.3e-14 82.0 61 67.2
HPP92_001970 Vanilla planifolia HOM05D001558 ORTHO05D005808 9.5e-14 80.9 49 75.5
CSS0036487 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 7.6e-11 71.2 53 66.0
TPR.G32025 Trifolium pratense HOM05D001558 ORTHO05D005808 3.8e-10 68.9 60 61.7
SGA_v2.0_scaffold31G12893 Striga asiatica HOM05D001558 ORTHO05D005808 4.9e-10 68.6 49 65.3
Cre12.g552851 Chlamydomonas reinhardtii HOM05D001558 ORTHO05D005808 8.4e-10 67.8 62 50.0
MCO11G381 Micromonas commoda HOM05D001558 ORTHO05D005808 1.4e-09 67.0 64 50.0
ClCG04G010210 Citrullus lanatus HOM05D001558 ORTHO05D005808 1.6e-08 63.5 35 80.0


User provided reference genes

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