Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.7e-111 404.8 196 100.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.5e-72 276.6 191 77.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.7e-71 271.9 191 77.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 7.8e-69 264.2 191 75.4
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 6.6e-68 261.2 191 74.3
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.4e-57 226.9 191 63.4
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.8e-56 221.5 193 61.7
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 9.9e-56 220.7 191 60.7
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 9.9e-56 220.7 193 62.2
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 4.9e-55 218.4 214 58.4
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 6.4e-55 218.0 191 62.3
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 4.2e-54 215.3 191 61.3
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.1e-53 213.0 192 60.9
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.1e-53 213.0 192 60.9
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 2.7e-53 212.6 192 60.9
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 4.6e-53 211.8 191 60.7
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.0e-52 210.7 191 61.3
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.3e-52 210.3 191 61.8
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.5e-51 206.1 199 57.3
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.1e-50 203.0 188 57.4
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 8.1e-50 201.1 193 58.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.4e-49 200.3 193 56.5
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 4.4e-48 195.3 193 52.3
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 9.9e-48 194.1 193 52.3
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.9e-48 194.1 191 55.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.3e-47 193.7 193 52.3
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.7e-47 193.4 193 52.3
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-47 193.4 148 73.0
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 4.9e-47 191.8 193 53.4
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 4.9e-47 191.8 193 53.4
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 6.4e-47 191.4 191 55.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.1e-46 190.7 193 52.3
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 7.1e-46 188.0 135 76.3
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.0e-45 184.9 193 53.4
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.0e-45 184.9 193 53.4
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 7.8e-45 184.5 191 51.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.3e-44 183.7 193 53.4
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.7e-44 183.3 196 54.1
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.7e-44 183.3 192 53.1
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.3e-44 183.0 191 54.5
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 3.0e-44 182.6 193 52.8
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 6.6e-44 181.4 194 53.1
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 6.6e-44 181.4 196 52.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.1e-43 180.6 160 60.6
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.9e-43 179.9 193 52.3
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.3e-43 178.7 196 51.5
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.3e-43 178.7 194 52.1
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 5.6e-43 178.3 193 51.8
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 7.3e-43 177.9 196 51.5
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 7.3e-43 177.9 196 51.5
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 9.6e-43 177.6 194 55.2
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 9.6e-43 177.6 196 52.6
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.3e-42 177.2 205 48.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.1e-42 176.4 193 52.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.8e-42 176.0 193 52.3
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.6e-42 175.6 194 51.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.6e-42 175.6 194 52.6
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.2e-42 174.9 194 52.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.1e-41 174.1 196 50.5
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.1e-41 174.1 194 51.5
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.1e-41 174.1 145 66.2
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.4e-41 173.7 191 47.6
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.4e-41 173.7 135 68.9
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.8e-41 173.3 193 50.8
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.8e-41 173.3 193 50.8
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.8e-41 173.3 193 51.8
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.4e-41 172.9 194 51.5
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 4.0e-41 172.2 196 49.0
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.2e-40 170.6 191 51.8
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.5e-40 170.2 190 51.1
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 2.0e-40 169.9 196 49.0
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.0e-40 169.9 190 51.1
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 7.6e-40 167.9 190 49.5
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 9.9e-40 167.5 191 48.7
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.7e-39 166.8 191 48.2
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 4.9e-39 165.2 194 48.5
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 4.9e-39 165.2 193 49.2
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 6.4e-39 164.9 191 48.2
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 8.4e-39 164.5 195 47.2
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.9e-38 163.3 186 51.1
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.9e-38 163.3 168 50.0
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.4e-38 162.9 190 47.9
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 5.4e-38 161.8 191 50.8
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.2e-37 160.6 190 47.4
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.2e-37 160.6 190 46.8
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.5e-37 159.1 206 46.6
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 7.9e-37 157.9 220 45.9
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.0e-36 157.5 193 48.2
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.3e-36 157.1 190 45.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.8e-36 156.8 195 45.6
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.9e-36 155.6 193 45.1
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.5e-35 153.7 189 47.1
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 3.3e-35 152.5 178 51.7
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 4.3e-35 152.1 191 47.1
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 7.4e-35 151.4 189 47.1
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.6e-35 151.0 191 47.1
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.6e-34 150.2 117 67.5
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-34 149.8 191 46.6
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-34 149.8 191 46.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.8e-34 149.4 223 42.2
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 3.7e-34 149.1 218 44.5
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.8e-33 146.7 174 45.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 3.1e-33 146.0 231 41.6
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 4.0e-33 145.6 191 42.9
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 6.9e-33 144.8 259 38.6
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.0e-32 143.3 174 44.8
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.4e-32 142.5 194 46.9
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 4.5e-32 142.1 191 42.4
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.5e-32 142.1 110 65.5
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.2e-31 139.8 220 40.9
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.9e-31 139.4 178 45.5
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.9e-31 139.4 224 40.2
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 4.9e-31 138.7 223 41.3
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.6e-29 133.7 223 37.7
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 2.1e-29 133.3 164 47.6
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 2.1e-29 133.3 73 91.8
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 6.0e-29 131.7 224 38.4
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 7.9e-29 131.3 224 38.4
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.0e-28 131.0 139 57.6
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.0e-28 131.0 224 37.5
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.3e-28 130.6 224 37.1
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.3e-28 130.6 241 36.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.1e-27 127.5 165 46.1
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 5.6e-27 125.2 166 46.4
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 9.6e-27 124.4 108 58.3
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.3e-26 124.0 101 61.4
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.3e-26 124.0 191 38.2
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 2.8e-26 122.9 103 68.0
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.7e-26 122.5 103 61.2
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.4e-25 119.8 150 46.7
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.4e-25 119.8 221 38.0
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.0e-25 119.0 102 58.8
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.6e-24 116.3 207 35.3
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 4.5e-24 115.5 245 32.2
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.7e-23 113.6 150 46.0
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 3.8e-23 112.5 193 39.9
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.2e-21 107.5 192 34.4
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.2e-21 107.5 192 34.4
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.6e-21 105.5 144 46.5
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.3e-20 103.2 103 48.5
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.1e-19 100.9 190 35.3
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.8e-18 96.3 177 39.0
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 8.2e-18 94.7 169 35.5
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.4e-17 93.2 189 34.4
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.0e-15 87.8 119 40.3
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 2.2e-15 86.7 195 27.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 6.1e-13 78.6 117 41.9
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-12 77.8 78 51.3
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 3.3e-11 72.8 77 50.6
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.3e-11 72.8 55 65.5
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.0e-07 61.2 50 64.0
SHI09667 Sapria himalayana HOM05D000105 ORTHO05D000023 7.2e-06 55.1 80 35.0


User provided reference genes

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