Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.0e-81 306.6 149 100.0
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.1e-78 295.0 148 95.3
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.0e-77 292.4 148 93.9
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.4e-73 279.6 148 91.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.6e-72 275.4 136 97.1
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 5.7e-72 274.2 148 89.2
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 4.1e-70 268.1 144 88.2
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 4.7e-66 254.6 148 79.7
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.4e-65 253.1 148 81.8
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.0e-65 251.9 148 81.8
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 9.8e-64 246.9 148 78.4
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 8.3e-63 243.8 148 76.4
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 5.4e-62 241.1 148 76.4
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 7.0e-62 240.7 148 79.1
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.2e-61 240.0 148 79.1
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 7.8e-61 237.3 148 76.4
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.3e-60 235.7 148 76.4
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 3.8e-60 235.0 148 70.9
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 7.3e-59 230.7 148 71.6
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.5e-59 230.3 148 70.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.2e-58 229.9 149 73.2
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.1e-58 229.2 149 73.2
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 2.8e-58 228.8 149 73.2
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 2.8e-58 228.8 148 70.3
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 4.7e-58 228.0 148 70.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 8.9e-57 223.8 148 68.9
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.2e-56 223.4 148 68.9
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.4e-56 221.9 148 68.2
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.4e-56 221.5 148 70.9
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 9.8e-56 220.3 148 66.2
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.3e-55 219.9 148 66.2
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.7e-55 219.5 148 66.9
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.7e-55 219.5 148 66.9
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.2e-55 219.2 148 72.3
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 4.9e-55 218.0 148 65.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.8e-54 216.1 148 65.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 3.2e-54 215.3 131 77.1
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.1e-54 214.9 150 67.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.1e-54 214.9 150 67.3
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 7.0e-54 214.2 148 67.6
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 9.2e-54 213.8 150 66.7
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 9.2e-54 213.8 150 66.7
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.2e-53 213.4 151 67.5
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.2e-53 213.4 148 64.9
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.6e-53 213.0 148 64.9
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 7.8e-53 210.7 151 64.9
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 1.0e-52 210.3 151 64.9
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.3e-52 209.9 148 64.2
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.3e-52 209.9 148 66.9
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.7e-52 209.5 151 68.2
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.0e-52 208.8 151 65.6
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 3.9e-52 208.4 151 64.9
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 3.9e-52 208.4 151 64.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 5.0e-52 208.0 148 64.2
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.0e-52 208.0 150 65.3
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 6.6e-52 207.6 151 64.9
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 6.6e-52 207.6 148 67.6
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.6e-52 207.6 150 65.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.6e-52 207.6 150 65.3
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 8.6e-52 207.2 151 64.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 8.6e-52 207.2 151 64.2
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.1e-51 206.8 151 66.2
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 1.5e-51 206.5 148 63.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.5e-51 206.5 148 62.2
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.5e-51 206.5 151 65.6
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 2.5e-51 205.7 151 62.9
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 7.3e-51 204.1 151 65.6
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 9.5e-51 203.8 151 63.6
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.6e-50 203.0 148 65.5
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 2.1e-50 202.6 148 62.8
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 2.1e-50 202.6 148 62.8
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.8e-50 202.2 148 64.2
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.8e-50 202.2 148 64.2
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 4.7e-50 201.4 151 61.6
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 6.2e-50 201.1 151 62.3
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.1e-49 200.3 151 62.9
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.0e-49 198.4 149 62.4
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 5.2e-49 198.0 148 63.5
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 6.8e-49 197.6 149 62.4
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.2e-48 196.8 151 60.9
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.5e-48 196.4 113 85.8
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.0e-48 196.1 149 61.7
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 4.4e-48 194.9 149 60.4
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 5.8e-48 194.5 148 73.0
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.3e-47 193.4 150 61.3
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.7e-47 193.0 152 59.2
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 4.9e-47 191.4 149 59.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 8.3e-47 190.7 148 57.4
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.1e-46 190.3 114 80.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.9e-46 189.5 149 64.4
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.4e-46 189.1 152 58.6
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 3.2e-46 188.7 148 61.5
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.0e-46 187.6 148 60.1
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.0e-46 187.6 148 60.1
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.0e-45 186.0 151 58.9
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.0e-45 184.5 148 59.5
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 6.6e-44 181.0 148 60.8
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 8.6e-44 180.6 135 65.2
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 1.5e-43 179.9 175 54.3
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 3.3e-43 178.7 147 59.2
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 7.3e-43 177.6 140 61.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 9.5e-43 177.2 149 56.4
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.2e-42 176.8 175 52.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.6e-42 176.4 174 53.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.8e-42 175.6 181 52.5
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 8.1e-42 174.1 123 63.4
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.3e-41 172.6 175 50.9
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 3.1e-41 172.2 123 65.0
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.2e-40 170.2 163 55.2
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.5e-40 169.9 180 48.3
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 3.4e-40 168.7 148 51.4
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 5.8e-40 167.9 100 79.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 9.9e-40 167.2 188 48.4
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.9e-39 164.9 119 59.7
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 7.1e-38 161.0 181 48.1
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.2e-37 160.2 148 50.0
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.6e-34 149.8 181 42.5
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.1e-34 149.4 104 69.2
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.8e-34 149.1 181 43.6
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 4.7e-34 148.3 181 43.1
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 4.7e-34 148.3 181 43.6
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.4e-33 146.7 203 40.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 3.4e-32 142.1 148 48.0
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.9e-31 139.0 149 46.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.9e-31 139.0 149 46.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-30 137.1 86 73.3
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.9e-30 136.3 148 45.9
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.9e-30 136.3 123 61.8
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 5.4e-30 134.8 150 46.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.0e-28 130.6 101 59.4
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.1e-27 127.1 137 48.2
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.6e-26 122.1 149 47.0
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 4.7e-26 121.7 139 46.8
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 4.7e-26 121.7 153 41.8
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 3.4e-24 115.5 149 35.6
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 5.8e-24 114.8 154 39.6
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.9e-23 111.7 148 39.9
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.9e-22 109.8 99 52.5
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.4e-22 108.2 148 39.2
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.6e-21 105.1 107 48.6
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.7e-20 103.2 65 69.2
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 3.6e-18 95.5 89 49.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 4.5e-16 88.6 155 32.3
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 2.9e-15 85.9 143 37.8
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.8e-15 85.5 72 52.8
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 8.4e-15 84.3 67 56.7
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.2e-14 82.0 68 54.4
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.2e-13 80.5 64 57.8
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.3e-12 77.0 158 27.8
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.8e-12 76.6 66 50.0
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 3.3e-11 72.4 47 70.2
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 9.0e-09 64.3 30 100.0
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.7e-07 60.1 48 54.2
SHI09667 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-06 56.6 53 49.1


User provided reference genes

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