Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13908 Trifolium pratense HOM05D001601 ORTHO05D006936 3.3e-69 265.0 140 100.0
Medtr4g091990 Medicago truncatula HOM05D001601 ORTHO05D006936 2.9e-33 145.6 143 59.4
Glyma.15G063900 Glycine max HOM05D001601 ORTHO05D006936 8.4e-33 144.1 143 53.8
Glyma.13G250300 Glycine max HOM05D001601 ORTHO05D006936 1.9e-32 142.9 146 54.8
Psat7g107600 Pisum sativum HOM05D001601 ORTHO05D006936 3.2e-32 142.1 143 58.0
Glyma.15G064000 Glycine max HOM05D001601 ORTHO05D006936 2.1e-31 139.4 142 52.8
Phvul.006G195400 Phaseolus vulgaris HOM05D001601 ORTHO05D006936 3.9e-30 135.2 143 53.1
Phvul.006G195500 Phaseolus vulgaris HOM05D001601 ORTHO05D006936 5.6e-29 131.3 143 52.4
Lj4g0002570 Lotus japonicus HOM05D001601 ORTHO05D006936 8.1e-28 127.5 143 47.6
VMungo0540G0143 Vigna mungo HOM05D001601 ORTHO05D006936 8.1e-28 127.5 135 52.6
VMungo0540G1059 Vigna mungo HOM05D001601 ORTHO05D006936 1.8e-27 126.3 143 51.0
Lalb_Chr16g0383321 Lupinus albus HOM05D001601 ORTHO05D006936 9.0e-27 124.0 119 54.6
Medtr4g091910 Medicago truncatula HOM05D001601 ORTHO05D006936 1.5e-26 123.2 122 52.5
arahy.Tifrunner.gnm1.ann1.D0FPDW Arachis hypogaea HOM05D001601 ORTHO05D006936 1.3e-25 120.2 141 48.9
arahy.Tifrunner.gnm1.ann1.4R4J32 Arachis hypogaea HOM05D001601 ORTHO05D006936 1.7e-25 119.8 141 48.9
Lj4g0026669 Lotus japonicus HOM05D001601 ORTHO05D006936 4.9e-25 118.2 144 47.9
Nitab4.5_0003045g0030 Nicotiana tabacum HOM05D001601 ORTHO05D006936 1.9e-24 116.3 145 44.8
Nitab4.5_0012549g0030 Nicotiana tabacum HOM05D001601 ORTHO05D006936 1.9e-24 116.3 145 45.5
Ca_18464_v3 Cicer arietinum L. HOM05D001601 ORTHO05D006936 3.5e-23 112.1 135 45.9
Ca_29636_v3 Cicer arietinum L. HOM05D001601 ORTHO05D006936 3.5e-23 112.1 135 45.9
Lsat_1_v5_gn_7_18580 Lactuca sativa HOM05D001601 ORTHO05D006936 4.6e-23 111.7 140 44.3
Sabra04G0016800 Salix brachista HOM05D001601 ORTHO05D006936 4.6e-23 111.7 143 45.5
Psat7g107440 Pisum sativum HOM05D001601 ORTHO05D006936 7.9e-23 110.9 131 42.0
Lj2g0002048 Lotus japonicus HOM05D001601 ORTHO05D006936 1.8e-22 109.8 122 51.6
Peaxi162Scf00931g00515 Petunia axillaris HOM05D001601 ORTHO05D006936 1.8e-22 109.8 141 46.8
Sabra11G0025700 Salix brachista HOM05D001601 ORTHO05D006936 2.3e-22 109.4 143 44.8
CAN.G424.87 Capsicum annuum HOM05D001601 ORTHO05D006936 3.0e-22 109.0 145 44.8
Hma1.2p1_0809F.1_g221820 Hydrangea macrophylla HOM05D001601 ORTHO05D006936 3.0e-22 109.0 143 46.2
Potri.004G029800 Populus trichocarpa HOM05D001601 ORTHO05D006936 3.9e-22 108.6 143 45.5
TPR.G13933 Trifolium pratense HOM05D001601 ORTHO05D006936 5.1e-22 108.2 121 51.2
Glyma.13G250200 Glycine max HOM05D001601 ORTHO05D006936 3.3e-21 105.5 121 47.9
Solyc02g079810.3 Solanum lycopersicum HOM05D001601 ORTHO05D006936 3.3e-21 105.5 144 43.1
THA.LOC104807908 Tarenaya hassleriana HOM05D001601 ORTHO05D006936 4.3e-21 105.1 142 43.0
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 1.3e-20 103.6 142 47.9
Thhalv10027186m.g Eutrema salsugineum HOM05D001601 ORTHO05D006936 2.1e-20 102.8 151 41.7
Cfa000292 Carpinus fangiana HOM05D001601 ORTHO05D006936 4.8e-20 101.7 144 43.1
Prupe.4G030600 Prunus persica HOM05D001601 ORTHO05D006936 4.8e-20 101.7 143 42.7
Manes.16G015900 Manihot esculenta HOM05D001601 ORTHO05D006936 6.2e-20 101.3 144 45.8
Haze_06641 Corylus avellana HOM05D001601 ORTHO05D006936 8.1e-20 100.9 143 41.3
Haze_06652 Corylus avellana HOM05D001601 ORTHO05D006936 8.1e-20 100.9 143 41.3
Glyma.07G187900 Glycine max HOM05D001601 ORTHO05D006936 1.1e-19 100.5 116 50.0
Sopen02g024580 Solanum pennellii HOM05D001601 ORTHO05D006936 1.1e-19 100.5 144 42.4
Duzib192G0154 Durio zibethinus HOM05D001601 ORTHO05D006936 1.4e-19 100.1 140 46.4
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 1.8e-19 99.8 120 48.3
CARHR227920 Cardamine hirsuta HOM05D001601 ORTHO05D006936 3.1e-19 99.0 151 39.1
Lalb_Chr18g0060091 Lupinus albus HOM05D001601 ORTHO05D006936 3.1e-19 99.0 151 43.7
BcaC01g00703 Brassica carinata HOM05D001601 ORTHO05D006936 4.0e-19 98.6 152 38.2
C03p83350 Brassica napus HOM05D001601 ORTHO05D006936 4.0e-19 98.6 152 38.2
BolC3t20616H Brassica oleracea HOM05D001601 ORTHO05D006936 4.0e-19 98.6 152 38.2
Cpa.g.sc871.3 Carica papaya HOM05D001601 ORTHO05D006936 4.0e-19 98.6 143 44.1
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 5.3e-19 98.2 119 48.7
HanXRQChr05g0130851 Helianthus annuus HOM05D001601 ORTHO05D006936 6.9e-19 97.8 143 42.0
CiPaw.09G153700 Carya illinoinensis HOM05D001601 ORTHO05D006936 1.2e-18 97.1 142 42.3
AL7G32770 Arabidopsis lyrata HOM05D001601 ORTHO05D006936 1.5e-18 96.7 146 39.7
COL.COLO4_31670 Corchorus olitorius HOM05D001601 ORTHO05D006936 1.5e-18 96.7 140 45.0
ECA236G4197 Erigeron canadensis HOM05D001601 ORTHO05D006936 2.0e-18 96.3 142 38.7
AT4G21330 Arabidopsis thaliana HOM05D001601 ORTHO05D006936 3.4e-18 95.5 145 40.0
BcaB03g11695 Brassica carinata HOM05D001601 ORTHO05D006936 5.8e-18 94.7 151 38.4
CSS0013390 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D006936 5.8e-18 94.7 143 41.3
RcHm_v2.0_Chr5g0004791 Rosa chinensis HOM05D001601 ORTHO05D006936 7.6e-18 94.4 144 39.6
THA.LOC104812950 Tarenaya hassleriana HOM05D001601 ORTHO05D006936 7.6e-18 94.4 141 39.0
AUR62014640 Chenopodium quinoa HOM05D001601 ORTHO05D006936 1.0e-17 94.0 143 38.5
AUR62044052 Chenopodium quinoa HOM05D001601 ORTHO05D006936 1.0e-17 94.0 143 38.5
BcaNung03825 Brassica carinata HOM05D001601 ORTHO05D006936 1.3e-17 93.6 152 35.5
RcHm_v2.0_Chr5g0025741 Rosa chinensis HOM05D001601 ORTHO05D006936 1.7e-17 93.2 143 39.2
Sp7g19420 Schrenkiella parvula HOM05D001601 ORTHO05D006936 2.9e-17 92.4 151 37.7
Carub.0007s2009 Capsella rubella HOM05D001601 ORTHO05D006936 3.8e-17 92.0 147 38.1
Manes.17G030700 Manihot esculenta HOM05D001601 ORTHO05D006936 4.9e-17 91.7 146 44.5
vmacro15846 Vaccinium macrocarpon HOM05D001601 ORTHO05D006936 4.9e-17 91.7 119 42.9
Nitab4.5_0003347g0100 Nicotiana tabacum HOM05D000055 ORTHO05D002202 6.5e-17 91.3 145 41.4
QL05p077813 Quercus lobata HOM05D001601 ORTHO05D006936 6.5e-17 91.3 142 40.1
Atru.chr10.2084 Acer truncatum HOM05D001601 ORTHO05D006936 8.4e-17 90.9 147 40.8
FvH4_3g03170 Fragaria vesca HOM05D001601 ORTHO05D006936 8.4e-17 90.9 144 39.6
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 1.9e-16 89.7 119 41.2
Eucgr.D00877 Eucalyptus grandis HOM05D001601 ORTHO05D006936 2.5e-16 89.4 143 39.2
FAN21G1209 Fragaria x ananassa HOM05D001601 ORTHO05D006936 3.2e-16 89.0 144 38.9
Gorai.011G019900 Gossypium raimondii HOM05D001601 ORTHO05D006936 3.2e-16 89.0 143 41.3
Hund21310 Selenicereus undatus HOM05D001601 ORTHO05D006936 3.2e-16 89.0 146 37.0
Ciclev10017674m.g Citrus clementina HOM05D001601 ORTHO05D006936 4.2e-16 88.6 114 44.7
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 4.2e-16 88.6 119 42.9
Gohir.D10G017900 Gossypium hirsutum HOM05D001601 ORTHO05D006936 4.2e-16 88.6 143 41.3
MD10G1309600 Malus domestica HOM05D001601 ORTHO05D006936 5.5e-16 88.2 118 41.5
TWI38G2289 Tripterygium wilfordii HOM05D001601 ORTHO05D006936 5.5e-16 88.2 140 37.9
A01p12660 Brassica napus HOM05D001601 ORTHO05D006936 7.1e-16 87.8 151 36.4
C01p15250 Brassica napus HOM05D001601 ORTHO05D006936 7.1e-16 87.8 151 36.4
BolC1t01477H Brassica oleracea HOM05D001601 ORTHO05D006936 7.1e-16 87.8 151 36.4
BraA01t01209Z Brassica rapa HOM05D001601 ORTHO05D006936 7.1e-16 87.8 151 36.4
FAN21G1145 Fragaria x ananassa HOM05D001601 ORTHO05D006936 9.3e-16 87.4 135 40.0
Aa31LG6G3380 Aethionema arabicum HOM05D001601 ORTHO05D006936 1.6e-15 86.7 151 39.7
Actinidia24046 Actinidia chinensis HOM05D001601 ORTHO05D006936 2.1e-15 86.3 118 44.1
EL10As6g23659 Beta vulgaris HOM05D001601 ORTHO05D006936 2.1e-15 86.3 131 38.9
AUR62012560 Chenopodium quinoa HOM05D001601 ORTHO05D006936 4.6e-15 85.1 142 37.3
Peaxi162Scf00003g01722 Petunia axillaris HOM05D001601 ORTHO05D006936 4.6e-15 85.1 156 37.8
Sc24g0000600 Simmondsia chinensis HOM05D001601 ORTHO05D006936 7.9e-15 84.3 143 36.4
DCAR_008106 Daucus carota HOM05D001601 ORTHO05D006936 1.8e-14 83.2 140 35.7
Migut.M01254 Erythranthe guttata HOM05D001601 ORTHO05D006936 3.9e-14 82.0 143 37.1
Gohir.A10G017650 Gossypium hirsutum HOM05D001601 ORTHO05D006936 3.9e-14 82.0 119 44.5
FAN25G1141 Fragaria x ananassa HOM05D001601 ORTHO05D006936 5.1e-14 81.6 137 37.2
Rhsim02G0116400 Rhododendron simsii HOM05D001601 ORTHO05D006936 6.7e-14 81.3 119 37.8
Migut.M01250 Erythranthe guttata HOM05D001601 ORTHO05D006936 3.3e-13 79.0 143 35.0
PSO210G5169 Papaver somniferum HOM05D001601 ORTHO05D006936 3.3e-13 79.0 141 36.2
Aa31LG9G9270 Aethionema arabicum HOM05D001601 ORTHO05D006936 5.7e-13 78.2 143 35.0
TAR626G1124 Trochodendron aralioides HOM05D001601 ORTHO05D006936 5.7e-13 78.2 126 39.7
Cc02_g11910 Coffea canephora HOM05D001601 ORTHO05D006936 7.4e-13 77.8 145 33.8
SHI50341 Sapria himalayana HOM05D001601 ORTHO05D006936 7.4e-13 77.8 134 38.8
Dinv24842 Davidia involucrata HOM05D000812 ORTHO05D002628 2.1e-12 76.3 146 32.9
Migut.M01252 Erythranthe guttata HOM05D001601 ORTHO05D006936 2.1e-12 76.3 145 35.2
PGR004G1615 Punica granatum HOM05D001601 ORTHO05D006936 3.7e-12 75.5 143 37.8
Aqoxy4G01890 Aquilegia oxysepala HOM05D001601 ORTHO05D006936 6.3e-12 74.7 146 35.6
Sed0016320 Sechium edule HOM05D001601 ORTHO05D006936 8.2e-12 74.3 142 35.9
Haze_12188 Corylus avellana HOM05D001601 ORTHO05D002628 2.4e-11 72.8 119 36.1
Oeu050578.1 Olea europaea HOM05D001601 ORTHO05D006936 4.1e-11 72.0 124 33.9
Aqoxy4G01891 Aquilegia oxysepala HOM05D001601 ORTHO05D006936 5.3e-11 71.6 135 37.0
CANSAT56G4233 Cannabis sativa HOM05D001601 ORTHO05D006936 9.0e-11 70.9 119 35.3
Migut.M01256 Erythranthe guttata HOM05D001601 ORTHO05D006936 9.0e-11 70.9 142 33.1
TWI63G0209 Tripterygium wilfordii HOM05D001601 ORTHO05D006936 9.0e-11 70.9 133 36.8
MSTRG.18499 Avicennia marina HOM05D001601 ORTHO05D002628 2.6e-10 69.3 147 31.3
PSO339G4922 Papaver somniferum HOM05D001601 ORTHO05D006936 2.6e-10 69.3 141 33.3
PSO801G0803 Papaver somniferum HOM05D001601 ORTHO05D006936 4.5e-10 68.6 146 32.2
CSS0039169 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 5.9e-10 68.2 146 32.2
Lalb_Chr09g0334991 Lupinus albus HOM05D001601 ORTHO05D002628 7.6e-10 67.8 145 34.5
TAR622G1239 Trochodendron aralioides HOM05D001601 ORTHO05D002628 1.3e-09 67.0 172 26.2
Psat4g124280 Pisum sativum HOM05D001601 ORTHO05D002628 2.2e-09 66.2 139 28.8
vmacro16245 Vaccinium macrocarpon HOM05D001601 ORTHO05D002628 2.2e-09 66.2 139 36.0
MD16G1093900 Malus domestica HOM05D001601 ORTHO05D002628 2.9e-09 65.9 155 32.9
PGR004G1446 Punica granatum HOM05D001601 ORTHO05D006936 3.8e-09 65.5 127 37.0
Nn1g06916 Nelumbo nucifera HOM05D001601 ORTHO05D006936 1.9e-08 63.2 110 37.3
QL03p060111 Quercus lobata HOM05D001601 ORTHO05D002628 2.5e-08 62.8 136 35.3
PSO478G3808 Papaver somniferum HOM05D001601 ORTHO05D006936 3.2e-08 62.4 139 30.2
TAR629G2382 Trochodendron aralioides HOM05D001601 ORTHO05D002628 3.2e-08 62.4 167 26.3
Ciclev10012974m.g Citrus clementina HOM05D001601 ORTHO05D006936 4.2e-08 62.0 113 41.6
MBI02_g35315_MAGBIO Magnolia biondii HOM05D001601 ORTHO05D006936 4.2e-08 62.0 132 34.8
Nitab4.5_0000212g0130 Nicotiana tabacum HOM05D000055 ORTHO05D002202 5.5e-08 61.6 121 38.0
VMungo0251G2485 Vigna mungo HOM05D001601 ORTHO05D002628 7.2e-08 61.2 141 31.9
Migut.D00743 Erythranthe guttata HOM05D001601 ORTHO05D002628 9.3e-08 60.8 141 29.8
Lj3A1054T81 Lonicera japonica HOM05D001601 ORTHO05D002628 9.3e-08 60.8 119 31.9
Lj4g0008008 Lotus japonicus HOM05D001601 ORTHO05D002628 1.2e-07 60.5 128 29.7
DCAR_007086 Daucus carota HOM05D001601 ORTHO05D002628 2.7e-07 59.3 154 27.9
Gohir.A12G143000 Gossypium hirsutum HOM05D001601 ORTHO05D002628 2.7e-07 59.3 147 31.3
SalBow6G5782 Salvia bowleyana HOM05D001601 ORTHO05D002628 2.7e-07 59.3 140 30.7
Rhsim12G0118200 Rhododendron simsii HOM05D000812 ORTHO05D000672 3.6e-07 58.9 129 30.2
Atru.chr11.2041 Acer truncatum HOM05D001601 ORTHO05D002628 4.6e-07 58.5 134 32.8
HanXRQChr17g0539631 Helianthus annuus HOM05D001601 ORTHO05D002628 4.6e-07 58.5 131 32.1
PSO017G3589 Papaver somniferum HOM05D001601 ORTHO05D002628 4.6e-07 58.5 136 28.7
HPP92_000853 Vanilla planifolia HOM05D001601 ORTHO05D006936 4.6e-07 58.5 139 31.7
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 6.1e-07 58.2 154 28.6
MBI08_g34004_MAGBIO Magnolia biondii HOM05D001601 ORTHO05D002628 7.9e-07 57.8 79 35.4
Gorai.008G159000 Gossypium raimondii HOM05D001601 ORTHO05D002628 1.0e-06 57.4 131 32.1
MELO3C011994.2 Cucumis melo HOM05D001601 ORTHO05D002628 1.3e-06 57.0 154 28.6
SGA_v2.0_scaffold29G12096 Striga asiatica HOM05D001601 ORTHO05D002628 1.3e-06 57.0 121 31.4
EL10Ac6g13680 Beta vulgaris HOM05D001601 ORTHO05D002628 1.8e-06 56.6 141 28.4
Gohir.D12G147800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 1.8e-06 56.6 147 29.9
Lsat_1_v5_gn_3_27360 Lactuca sativa HOM05D001601 ORTHO05D002628 2.3e-06 56.2 144 28.5
SEGI_08844 Sequoiadendron giganteum HOM05D001601 ORTHO05D002628 2.3e-06 56.2 158 26.6
CDE02G4468 Ceratophyllum demersum HOM05D001601 ORTHO05D006936 3.0e-06 55.8 144 31.9
Nn3g16855 Nelumbo nucifera HOM05D001601 ORTHO05D002628 3.0e-06 55.8 130 33.8
Nn3g19711 Nelumbo nucifera HOM05D001601 ORTHO05D002628 3.0e-06 55.8 87 34.5
ClCG05G025360 Citrullus lanatus HOM05D001601 ORTHO05D002628 3.9e-06 55.5 154 28.6
Manes.12G028000 Manihot esculenta HOM05D001601 ORTHO05D002628 3.9e-06 55.5 148 29.7
TPR.G11734 Trifolium pratense HOM05D001601 ORTHO05D002628 3.9e-06 55.5 146 28.8
arahy.Tifrunner.gnm1.ann1.BX85EM Arachis hypogaea HOM05D001601 ORTHO05D002628 5.1e-06 55.1 144 27.1
TAR381G1205 Trochodendron aralioides HOM05D001601 ORTHO05D002628 5.1e-06 55.1 80 38.8
arahy.Tifrunner.gnm1.ann1.JV7126 Arachis hypogaea HOM05D001601 ORTHO05D002628 6.7e-06 54.7 143 29.4
CiPaw.06G121200 Carya illinoinensis HOM05D001601 ORTHO05D002628 6.7e-06 54.7 80 36.2
Aqoxy4G02135 Aquilegia oxysepala HOM05D001601 ORTHO05D006936 8.7e-06 54.3 102 35.3
Duzib268G1820 Durio zibethinus HOM05D001601 ORTHO05D002628 8.7e-06 54.3 135 31.1
Lsat_1_v5_gn_8_155680 Lactuca sativa HOM05D001601 ORTHO05D002628 8.7e-06 54.3 160 27.5
QL11p050977 Quercus lobata HOM05D001601 ORTHO05D002628 8.7e-06 54.3 89 32.6


User provided reference genes

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