Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 4.5e-261 904.0 456 100.0
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 7.5e-216 753.8 484 81.6
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 1.7e-199 699.5 484 76.2
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 1.3e-167 593.6 487 63.0
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 3.8e-167 592.0 483 64.0
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 1.3e-159 567.0 484 63.8
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 1.2e-157 560.5 484 60.7
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 1.6e-157 560.1 485 60.8
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 2.1e-157 559.7 485 60.8
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.6e-157 558.5 529 56.3
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 1.2e-139 500.7 479 53.7
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 1.2e-139 500.7 481 54.3
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 6.3e-138 495.0 480 51.9
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 2.0e-136 490.0 479 52.4
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 4.5e-136 488.8 483 53.2
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 9.4e-134 481.1 478 52.1
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 1.2e-133 480.7 483 50.7
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 6.1e-133 478.4 483 50.1
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 8.0e-133 478.0 477 52.0
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 3.4e-131 472.6 481 51.4
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 9.8e-131 471.1 482 50.4
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 2.2e-130 469.9 481 50.9
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 3.7e-130 469.2 492 50.4
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 1.3e-127 460.7 478 50.0
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 6.5e-127 458.4 479 49.3
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.1e-126 457.6 479 49.5
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 1.2e-125 454.1 482 51.2
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.7e-125 452.2 482 50.8
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 8.0e-125 451.4 479 49.5
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 5.2e-124 448.7 521 46.3
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 8.9e-124 448.0 481 48.2
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.1e-121 439.5 438 53.4
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 3.1e-121 439.5 467 49.5
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 4.1e-121 439.1 509 47.0
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 7.0e-121 438.3 478 47.7
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 2.9e-119 433.0 476 48.7
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 2.5e-118 429.9 484 47.1
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 4.3e-118 429.1 478 46.7
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 2.1e-117 426.8 486 44.2
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 3.6e-117 426.0 485 48.9
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 8.0e-117 424.9 465 47.5
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.4e-116 424.1 451 51.2
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.2e-115 421.0 487 46.8
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 4.4e-115 419.1 490 46.5
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 1.3e-114 417.5 482 45.2
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.2e-114 416.8 494 46.0
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 8.3e-114 414.8 456 47.1
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.1e-113 414.5 484 46.1
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 1.8e-113 413.7 480 45.6
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 5.4e-113 412.1 490 47.6
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 3.9e-111 406.0 489 47.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.5e-110 404.1 487 46.8
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 2.1e-109 400.2 482 47.3
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 2.1e-109 400.2 494 44.9
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 8.9e-108 394.8 463 46.2
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 1.2e-107 394.4 485 46.6
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 4.4e-107 392.5 458 48.5
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 7.5e-107 391.7 520 44.4
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.4e-105 386.7 480 43.8
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 3.2e-105 386.3 460 45.2
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 4.1e-105 386.0 330 68.5
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 5.4e-105 385.6 493 44.4
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 5.4e-105 385.6 556 40.8
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.2e-104 384.4 493 42.8
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 3.5e-104 382.9 461 45.8
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 4.6e-104 382.5 396 49.5
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.0e-103 381.3 463 45.4
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 5.0e-103 379.0 486 44.4
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 8.6e-103 378.3 451 47.7
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 8.6e-103 378.3 463 45.6
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 9.5e-102 374.8 444 46.4
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.6e-101 374.0 530 42.6
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 2.1e-101 373.6 487 43.7
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 5.8e-99 365.5 360 51.9
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 8.3e-98 361.7 407 48.4
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 1.9e-97 360.5 375 50.1
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.2e-97 359.8 529 39.9
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 1.0e-95 354.8 474 43.9
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.6e-93 347.4 487 41.3
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.8e-93 346.7 493 41.0
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 5.2e-92 342.4 487 41.5
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 8.9e-92 341.7 337 49.0
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.2e-91 341.3 406 46.1
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.2e-91 341.3 407 46.7
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 1.5e-91 340.9 485 40.0
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 9.6e-86 321.6 441 39.9
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 2.8e-85 320.1 474 37.8
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 9.9e-83 311.6 470 41.3
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 9.3e-81 305.1 261 57.1
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 2.1e-80 303.9 323 48.9
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 3.9e-79 299.7 327 46.8
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 1.0e-71 275.0 295 46.4
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 2.7e-64 250.4 468 32.3
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 8.4e-58 228.8 198 55.6
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 2.7e-56 223.8 168 61.9
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 3.0e-55 220.3 292 41.1
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 6.7e-55 219.2 290 42.8
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 3.3e-54 216.9 280 39.6
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 3.7e-53 213.4 142 67.6
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 6.1e-48 196.1 373 33.8
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 7.4e-46 189.1 301 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 1.7e-45 188.0 469 29.4
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 4.1e-36 156.8 171 46.2
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 3.5e-35 153.7 164 44.5
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 2.5e-33 147.5 229 40.2
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.0e-30 137.9 188 41.5
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-26 124.4 330 29.1
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 8.5e-26 122.5 130 46.9
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.6e-24 118.2 191 36.6
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 4.5e-19 100.1 91 51.6
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 3.2e-17 94.0 89 50.6
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 9.4e-17 92.4 279 30.8
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 4.0e-15 87.0 163 35.0
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 5.2e-15 86.7 172 34.3
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.0e-14 84.7 53 69.8
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 1.7e-13 81.6 132 35.6
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.2e-08 65.5 79 45.6
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 6.8e-07 59.7 102 35.3
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 4.4e-06 57.0 58 46.6


User provided reference genes

Program Settings