Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13306 Trifolium pratense HOM05D003633 ORTHO05D004245 6.3e-231 803.9 449 100.0
LjContig00564g0017285 Lotus japonicus HOM05D003633 ORTHO05D004245 2.0e-181 639.4 423 85.6
TPR.G1293 Trifolium pratense HOM05D003633 ORTHO05D004245 4.7e-178 628.2 426 80.0
Ca_06129_v3 Cicer arietinum L. HOM05D003633 ORTHO05D004245 6.8e-177 624.4 425 80.9
Lalb_Chr04g0249821 Lupinus albus HOM05D003633 ORTHO05D004245 1.9e-174 616.3 427 81.5
Glyma.14G044900 Glycine max HOM05D003633 ORTHO05D004245 9.2e-174 614.0 425 82.6
Glyma.02G271900 Glycine max HOM05D003633 ORTHO05D004245 1.2e-173 613.6 425 82.6
CiPaw.13G125200 Carya illinoinensis HOM05D003633 ORTHO05D004245 1.7e-172 609.8 426 76.5
VMungo1309G0828 Vigna mungo HOM05D003633 ORTHO05D004245 3.0e-172 609.0 426 82.4
Psat2g023680 Pisum sativum HOM05D003633 ORTHO05D004245 8.6e-172 607.4 426 81.0
Prupe.6G149900 Prunus persica HOM05D003633 ORTHO05D004245 8.0e-170 600.9 426 74.9
Atru.chr3.3038 Acer truncatum HOM05D003633 ORTHO05D004245 2.0e-168 596.3 427 74.5
Phvul.009G196800 Phaseolus vulgaris HOM05D003633 ORTHO05D004245 5.8e-168 594.7 425 80.5
Cpa.g.sc103.58 Carica papaya HOM05D003633 ORTHO05D004245 2.9e-167 592.4 419 75.4
Manes.06G005500 Manihot esculenta HOM05D003633 ORTHO05D004245 8.3e-167 590.9 426 74.6
arahy.Tifrunner.gnm1.ann1.Z8K404 Arachis hypogaea HOM05D003633 ORTHO05D004245 2.4e-166 589.3 423 79.7
arahy.Tifrunner.gnm1.ann1.65YTHF Arachis hypogaea HOM05D003633 ORTHO05D004245 4.1e-166 588.6 423 79.2
CANSAT54G1723 Cannabis sativa HOM05D003633 ORTHO05D004245 2.7e-165 585.9 425 73.9
Medtr1g051825 Medicago truncatula HOM05D003633 ORTHO05D004245 1.7e-164 583.2 425 80.2
GSVIVG01033181001 Vitis vinifera HOM05D003633 ORTHO05D004245 5.1e-164 581.6 415 75.9
arahy.Tifrunner.gnm1.ann1.HKS14U Arachis hypogaea HOM05D003633 ORTHO05D004245 2.5e-163 579.3 452 75.0
MD11G1177700 Malus domestica HOM05D003633 ORTHO05D004245 4.3e-163 578.6 422 75.1
Ciclev10027700m.g Citrus clementina HOM05D003633 ORTHO05D004245 2.1e-162 576.2 425 75.3
ClCG02G024050 Citrullus lanatus HOM05D003633 ORTHO05D004245 1.1e-161 573.9 425 72.7
Potri.009G155200 Populus trichocarpa HOM05D003633 ORTHO05D004245 1.1e-161 573.9 426 72.3
LjContig00564g0013149 Lotus japonicus HOM05D003633 ORTHO05D004245 1.5e-160 570.1 425 74.1
Thecc.09G266900 Theobroma cacao HOM05D003633 ORTHO05D004245 5.8e-160 568.2 426 73.2
TWI75G0107 Tripterygium wilfordii HOM05D003633 ORTHO05D004245 1.3e-159 567.0 426 72.8
Duzib170G1043 Durio zibethinus HOM05D003633 ORTHO05D004245 1.7e-159 566.6 426 71.8
Gohir.A05G076900 Gossypium hirsutum HOM05D003633 ORTHO05D004245 2.9e-159 565.8 425 75.1
THA.LOC104800499 Tarenaya hassleriana HOM05D003633 ORTHO05D004245 1.1e-158 563.9 424 73.6
vmacro21588 Vaccinium macrocarpon HOM05D003633 ORTHO05D004245 2.4e-158 562.8 423 74.7
MD03G1161700 Malus domestica HOM05D003633 ORTHO05D004245 1.2e-157 560.5 422 71.1
TAR636G3505 Trochodendron aralioides HOM05D003633 ORTHO05D004245 6.0e-157 558.1 422 71.1
CsaV3_4G023280 Cucumis sativus L. HOM05D003633 ORTHO05D004245 7.8e-157 557.8 425 71.5
Gohir.D05G079700 Gossypium hirsutum HOM05D003633 ORTHO05D004245 1.1e-155 553.9 425 74.1
Gorai.009G081300 Gossypium raimondii HOM05D003633 ORTHO05D004245 2.5e-155 552.7 425 74.1
Sp4g09970 Schrenkiella parvula HOM05D003633 ORTHO05D004245 2.8e-154 549.3 422 72.7
BcaB06g28118 Brassica carinata HOM05D003633 ORTHO05D004245 1.4e-153 547.0 425 71.5
FvH4_5g11061 Fragaria vesca HOM05D003633 ORTHO05D004245 3.1e-153 545.8 427 69.8
Thhalv10001887m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 4.4e-152 542.0 422 69.4
FAN04G2246 Fragaria x ananassa HOM05D003633 ORTHO05D004245 7.6e-152 541.2 424 70.3
MELO3C014687.2 Cucumis melo HOM05D003633 ORTHO05D004245 2.9e-151 539.3 425 69.6
A04p20650 Brassica napus HOM05D003633 ORTHO05D004245 3.8e-151 538.9 425 71.1
FAN18G2517 Fragaria x ananassa HOM05D003633 ORTHO05D004245 4.9e-151 538.5 424 70.0
Cc01_g08350 Coffea canephora HOM05D003633 ORTHO05D004245 8.4e-151 537.7 423 71.2
BraA04t17638Z Brassica rapa HOM05D003633 ORTHO05D004245 1.1e-150 537.3 433 69.3
FAN18G4241 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.9e-150 536.6 423 70.0
BolC4t27174H Brassica oleracea HOM05D003633 ORTHO05D004245 3.2e-150 535.8 421 68.4
BcaC02g08276 Brassica carinata HOM05D003633 ORTHO05D004245 4.2e-150 535.4 419 71.4
CARHR119550 Cardamine hirsuta HOM05D003633 ORTHO05D004245 4.6e-149 531.9 430 69.5
Dinv32833 Davidia involucrata HOM05D003633 ORTHO05D004245 6.0e-149 531.6 425 68.7
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.7e-148 530.0 422 69.0
Rhsim01G0197900 Rhododendron simsii HOM05D003633 ORTHO05D004245 3.0e-148 529.3 471 64.5
Medtr3g110055 Medicago truncatula HOM05D003633 ORTHO05D004245 1.1e-147 527.3 427 71.9
Nn2g11908 Nelumbo nucifera HOM05D003633 ORTHO05D004245 1.9e-147 526.6 422 69.4
Sed0007253 Sechium edule HOM05D003633 ORTHO05D004245 1.9e-147 526.6 425 67.5
PSO017G3356 Papaver somniferum HOM05D003633 ORTHO05D004245 5.6e-147 525.0 425 66.8
C04p56430 Brassica napus HOM05D003633 ORTHO05D004245 7.3e-147 524.6 419 69.7
Sabra09G0121700 Salix brachista HOM05D003633 ORTHO05D004245 9.6e-147 524.2 421 68.4
SalBow3G2138 Salvia bowleyana HOM05D003633 ORTHO05D004245 9.6e-147 524.2 419 67.5
Peaxi162Scf00355g00113 Petunia axillaris HOM05D003633 ORTHO05D004245 1.6e-146 523.5 437 70.0
SGA_v2.0_scaffold79G25491 Striga asiatica HOM05D003633 ORTHO05D004245 2.1e-146 523.1 425 69.6
Actinidia22465 Actinidia chinensis HOM05D003633 ORTHO05D004245 2.4e-145 519.6 390 70.5
PSO170G6842 Papaver somniferum HOM05D003633 ORTHO05D004245 6.9e-145 518.1 425 66.6
MBI05_g07506_MAGBIO Magnolia biondii HOM05D003633 ORTHO05D004245 6.4e-143 511.5 423 66.7
Carub.0004s0770 Capsella rubella HOM05D003633 ORTHO05D004245 8.4e-143 511.1 422 67.8
arahy.Tifrunner.gnm1.ann1.KL7BWI Arachis hypogaea HOM05D003633 ORTHO05D004245 3.2e-142 509.2 430 71.4
AL4G20920 Arabidopsis lyrata HOM05D003633 ORTHO05D004245 4.2e-142 508.8 429 66.9
HPP92_021530 Vanilla planifolia HOM05D003633 ORTHO05D004245 7.1e-142 508.1 421 66.0
AT2G27170 Arabidopsis thaliana HOM05D003633 ORTHO05D004245 2.7e-141 506.1 423 68.3
EL10Ac7g16251 Beta vulgaris HOM05D003633 ORTHO05D004245 2.7e-141 506.1 426 64.1
Actinidia06352 Actinidia chinensis HOM05D003633 ORTHO05D004245 3.9e-140 502.3 372 71.5
Migut.N02426 Erythranthe guttata HOM05D003633 ORTHO05D004245 1.6e-138 496.9 425 65.2
Sc12g0000470 Simmondsia chinensis HOM05D003633 ORTHO05D004245 2.6e-136 489.6 425 65.2
CDE06G2316 Ceratophyllum demersum HOM05D003633 ORTHO05D004245 1.7e-135 486.9 425 66.6
Aqoxy7G01992 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 6.4e-135 485.0 425 63.3
Zm00001eb297550 Zea mays HOM05D003633 ORTHO05D004245 6.4e-135 485.0 425 63.8
Nitab4.5_0003359g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 4.2e-134 482.3 470 62.6
COL.COLO4_25352 Corchorus olitorius HOM05D003633 ORTHO05D004245 5.1e-132 475.3 424 63.7
Eucgr.J00601 Eucalyptus grandis HOM05D003633 ORTHO05D004245 1.1e-131 474.2 388 68.6
RcHm_v2.0_Chr1g0362081 Rosa chinensis HOM05D003633 ORTHO05D004245 5.6e-131 471.9 419 63.2
Aa31LG5G8590 Aethionema arabicum HOM05D003633 ORTHO05D004245 1.6e-130 470.3 415 62.9
arahy.Tifrunner.gnm1.ann1.10ENSP Arachis hypogaea HOM05D003633 ORTHO05D004245 1.6e-130 470.3 447 65.8
CSS0028100 Camellia sinensis var. sinensis HOM05D003633 ORTHO05D004245 3.7e-130 469.2 371 71.4
RcHm_v2.0_Chr7g0186721 Rosa chinensis HOM05D003633 ORTHO05D004245 1.8e-129 466.8 356 71.1
Sopen06g030170 Solanum pennellii HOM05D003633 ORTHO05D004245 4.0e-129 465.7 353 73.1
BraA03t11884Z Brassica rapa HOM05D003633 ORTHO05D004245 1.5e-128 463.8 423 61.0
PGSC0003DMG400005912 Solanum tuberosum HOM05D003633 ORTHO05D004245 5.8e-128 461.8 348 73.6
Haze_23622 Corylus avellana HOM05D003633 ORTHO05D004245 7.6e-128 461.5 425 62.6
BcaC01g04925 Brassica carinata HOM05D003633 ORTHO05D004245 1.7e-127 460.3 421 60.3
PGR119G0283 Punica granatum HOM05D003633 ORTHO05D004245 2.2e-127 459.9 425 61.6
ATR0618G336 Amborella trichopoda HOM05D003633 ORTHO05D004245 2.9e-127 459.5 424 59.4
BolC3t15547H Brassica oleracea HOM05D003633 ORTHO05D004245 3.5e-125 452.6 429 58.5
A03p26730 Brassica napus HOM05D003633 ORTHO05D004245 1.3e-124 450.7 423 60.3
HanXRQChr06g0181531 Helianthus annuus HOM05D003633 ORTHO05D004245 1.8e-124 450.3 420 61.2
Nitab4.5_0000271g0010 Nicotiana tabacum HOM05D003633 ORTHO05D004245 5.1e-124 448.7 423 65.0
Oeu058179.1 Olea europaea HOM05D003633 ORTHO05D004245 1.3e-122 444.1 378 64.0
Mapoly0048s0100 Marchantia polymorpha HOM05D003633 ORTHO05D004245 4.8e-122 442.2 426 60.8
C03p32030 Brassica napus HOM05D003633 ORTHO05D004245 6.2e-122 441.8 426 58.2
ECA238G1454 Erigeron canadensis HOM05D003633 ORTHO05D004245 1.4e-121 440.7 422 59.5
Hma1.2p1_0218F.1_g092340 Hydrangea macrophylla HOM05D003633 ORTHO05D004245 2.4e-121 439.9 342 68.1
Thhalv10023124m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 5.3e-121 438.7 365 65.2
Migut.N02425 Erythranthe guttata HOM05D003633 ORTHO05D004245 6.9e-121 438.3 425 60.7
unitig_27.g25129 Utricularia gibba HOM05D003633 ORTHO05D004245 9.0e-121 438.0 423 58.9
Nitab4.5_0000200g0070 Nicotiana tabacum HOM05D003633 ORTHO05D004245 2.0e-120 436.8 425 60.9
Solyc06g073780.4 Solanum lycopersicum HOM05D003633 ORTHO05D004245 2.6e-120 436.4 423 60.0
Lsat_1_v5_gn_2_27520 Lactuca sativa HOM05D003633 ORTHO05D004245 5.5e-118 428.7 424 58.5
Ah.08g222470 Amaranthus hybridus HOM05D003633 ORTHO05D004245 1.6e-117 427.2 392 60.7
Pp3c24_13420 Physcomitrium patens HOM05D003633 ORTHO05D004245 5.9e-112 408.7 425 53.6
Lsat_1_v5_gn_2_27661 Lactuca sativa HOM05D003633 ORTHO05D004245 1.4e-110 404.1 409 56.2
AUR62020192 Chenopodium quinoa HOM05D003633 ORTHO05D004245 3.2e-110 402.9 425 55.3
Hund18817 Selenicereus undatus HOM05D003633 ORTHO05D004245 8.8e-108 394.8 442 55.2
AagrBONN_evm.TU.Sc2ySwM_228.640 Anthoceros agrestis HOM05D003633 ORTHO05D004245 9.7e-107 391.3 425 52.0
Lj2C853G1 Lonicera japonica HOM05D003633 ORTHO05D004245 4.4e-99 365.9 427 53.2
HPP92_021489 Vanilla planifolia HOM05D003633 ORTHO05D004245 5.7e-99 365.5 421 53.2
BcaB01g03052 Brassica carinata HOM05D003633 ORTHO05D004245 2.6e-91 340.1 421 50.6
Lj2C868T4 Lonicera japonica HOM05D003633 ORTHO05D004245 6.8e-84 315.5 301 61.1
AUR62001588 Chenopodium quinoa HOM05D003633 ORTHO05D004245 2.5e-78 297.0 425 45.4
Os02g0133300 Oryza sativa ssp. japonica HOM05D003633 ORTHO05D004245 3.1e-73 280.0 172 89.0
Aqoxy2G02431 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 1.6e-72 277.7 422 42.9
arahy.Tifrunner.gnm1.ann1.PDK0NA Arachis hypogaea HOM05D003633 ORTHO05D004245 3.7e-66 256.5 169 87.0
Lj2C849G3 Lonicera japonica HOM05D003633 ORTHO05D004245 2.0e-64 250.8 440 42.0
Lj2C874G5 Lonicera japonica HOM05D003633 ORTHO05D004245 2.7e-64 250.4 251 57.0
MCO04G096 Micromonas commoda HOM05D003633 ORTHO05D004245 7.8e-64 248.8 430 37.9
Lj2A851G15 Lonicera japonica HOM05D003633 ORTHO05D004245 1.8e-60 237.7 323 46.4
Peaxi162Scf00046g00529 Petunia axillaris HOM05D003633 ORTHO05D004245 3.2e-57 226.9 371 42.9
PRCOL_00007015 Prasinoderma coloniale HOM05D003633 ORTHO05D004245 3.5e-56 223.4 441 38.1
CBR_g39806 Chara braunii HOM05D003633 ORTHO05D004245 6.0e-56 222.6 408 42.6
arahy.Tifrunner.gnm1.ann1.HU1B6R Arachis hypogaea HOM05D003633 ORTHO05D004245 9.5e-54 215.3 138 88.4
Lj2C873T5 Lonicera japonica HOM05D003633 ORTHO05D004245 2.8e-53 213.8 161 73.9
arahy.Tifrunner.gnm1.ann1.UC5N5L Arachis hypogaea HOM05D000029 ORTHO05D002586 4.9e-50 203.0 310 46.1
SHI25312 Sapria himalayana HOM05D003633 ORTHO05D004245 2.4e-49 200.7 298 45.0
Lj2C854G2 Lonicera japonica HOM05D003633 ORTHO05D004245 6.0e-48 196.1 251 48.2
Cre10.g445650 Chlamydomonas reinhardtii HOM05D003633 ORTHO05D004245 9.5e-46 188.7 350 38.3
Nitab4.5_0007575g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 2.0e-43 181.0 292 41.8
Cfa023768 Carpinus fangiana HOM05D003633 ORTHO05D004245 1.8e-36 157.9 424 32.8
Os02g0133400 Oryza sativa ssp. japonica HOM05D003633 ORTHO05D004245 1.5e-35 154.8 205 44.9
Lj2C854G3 Lonicera japonica HOM05D003633 ORTHO05D004245 1.6e-32 144.8 161 55.3
arahy.Tifrunner.gnm1.ann1.84ELHW Arachis hypogaea HOM05D003633 ORTHO05D004245 9.9e-27 125.6 92 83.7
Lj2A874G36 Lonicera japonica HOM05D003633 ORTHO05D004245 1.5e-22 111.7 161 46.0
Lj2C873G2 Lonicera japonica HOM05D003633 ORTHO05D004245 1.8e-20 104.8 235 35.7
TPR.G1272 Trifolium pratense HOM05D003633 ORTHO05D043858 2.4e-20 104.4 65 87.7
Lsat_1_v5_gn_6_106240 Lactuca sativa HOM05D003633 ORTHO05D004245 1.1e-17 95.5 72 72.2
CDE04G1579 Ceratophyllum demersum HOM05D003633 ORTHO05D043858 2.5e-14 84.3 86 58.1
Nitab4.5_0007575g0040 Nicotiana tabacum HOM05D003633 ORTHO05D004245 7.1e-09 66.2 35 94.3
Lsat_1_v5_gn_6_60940 Lactuca sativa HOM05D003633 ORTHO05D004245 1.6e-08 65.1 224 30.8
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 9.6e-06 55.8 310 25.5


User provided reference genes

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