Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 2.0e-302 1041.6 513 100.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 8.0e-283 976.5 510 93.5
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 3.1e-282 974.5 511 93.7
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.7e-277 958.7 505 92.7
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.1e-276 956.1 514 91.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.5e-276 955.7 514 91.1
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 2.5e-276 954.9 511 91.2
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.3e-276 954.1 511 91.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 7.3e-276 953.4 517 90.7
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.8e-275 951.4 512 91.0
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.8e-275 951.4 512 91.0
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 9.2e-271 936.4 509 89.6
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.2e-270 936.0 502 91.0
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 3.0e-269 931.4 499 90.4
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.9e-269 931.0 500 90.4
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.9e-268 928.7 502 90.0
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 3.3e-268 927.9 511 88.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.1e-267 925.2 501 89.8
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 2.1e-267 925.2 512 88.7
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.2e-267 923.7 512 88.5
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.2e-267 923.7 512 88.5
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.1e-267 923.3 504 88.7
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 8.1e-267 923.3 501 89.6
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-266 922.9 502 89.0
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.4e-266 922.5 515 86.8
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.0e-266 921.0 510 87.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 5.2e-266 920.6 504 87.9
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 6.8e-266 920.2 500 89.0
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 8.9e-266 919.8 502 88.8
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 8.9e-266 919.8 511 87.1
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.2e-265 919.5 502 88.4
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.5e-265 919.1 504 88.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.0e-265 918.7 502 88.4
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.6e-265 918.3 512 88.1
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 4.4e-265 917.5 498 89.4
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.4e-265 917.5 506 87.4
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 7.6e-265 916.8 506 87.7
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.7e-264 915.6 503 88.1
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.2e-264 915.2 502 88.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.9e-264 914.8 519 86.1
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.9e-264 914.1 502 88.0
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 8.4e-264 913.3 511 86.3
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.9e-263 912.1 516 85.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.9e-263 912.1 513 86.4
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 3.2e-263 911.4 510 87.1
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 3.2e-263 911.4 519 85.7
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 3.2e-263 911.4 504 86.7
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 4.2e-263 911.0 503 87.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.6e-262 909.1 509 86.4
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.6e-262 909.1 509 87.4
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.1e-262 908.7 509 86.4
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.5e-262 907.9 513 84.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.6e-262 907.5 509 86.2
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 4.6e-262 907.5 508 86.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 7.8e-262 906.7 519 85.2
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.0e-261 906.4 499 86.6
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.3e-261 906.0 500 87.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.3e-261 906.0 503 87.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.3e-261 906.0 506 86.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 2.3e-261 905.2 518 84.2
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 5.1e-261 904.0 500 87.8
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.1e-261 904.0 512 86.7
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.5e-260 902.5 510 86.3
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.9e-260 902.1 539 82.7
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 3.3e-260 901.4 509 85.9
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.3e-260 901.4 509 86.1
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 3.3e-260 901.4 509 85.9
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.3e-260 901.4 502 87.5
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 4.3e-260 901.0 519 84.0
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 9.6e-260 899.8 504 86.9
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 9.6e-260 899.8 505 85.9
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-259 899.4 509 85.9
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.3e-259 899.4 509 85.9
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.6e-259 899.0 544 81.1
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.6e-259 899.0 499 86.2
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.6e-259 899.0 501 86.0
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.8e-259 898.3 502 87.1
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 6.2e-259 897.1 499 86.0
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 6.9e-258 893.6 515 83.7
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.2e-257 892.9 491 88.6
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.5e-257 892.5 523 82.6
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.5e-257 892.5 499 86.4
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 4.4e-257 891.0 519 84.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 4.4e-257 891.0 504 84.5
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 7.6e-257 890.2 493 88.0
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 7.6e-257 890.2 500 85.0
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 7.6e-257 890.2 500 85.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.7e-256 889.0 499 84.6
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.7e-256 889.0 502 85.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 4.9e-256 887.5 501 84.2
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 6.4e-256 887.1 511 84.1
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.1e-255 886.3 493 88.2
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 5.4e-255 884.0 502 84.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.0e-253 879.8 499 83.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.0e-253 879.8 511 83.0
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 3.9e-253 877.9 501 84.6
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.5e-252 875.2 499 83.4
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.2e-251 870.5 499 83.4
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.4e-250 869.4 526 80.8
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.3e-250 867.5 516 81.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.3e-250 867.5 516 81.8
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.2e-249 866.3 487 84.0
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.8e-249 864.0 503 80.7
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 4.6e-246 854.4 514 78.4
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.3e-240 836.3 501 77.8
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 4.9e-240 834.3 515 78.4
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.3e-237 826.2 500 80.6
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 9.0e-234 813.5 551 74.2
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.6e-233 812.0 501 76.2
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.3e-227 793.1 499 74.7
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.2e-225 786.6 506 73.5
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.6e-225 785.4 500 74.6
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.9e-224 781.9 506 72.7
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.9e-223 779.2 506 71.9
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.2e-222 776.5 501 73.3
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.6e-222 776.2 506 71.1
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.7e-220 767.7 473 81.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.7e-216 756.1 502 70.3
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.0e-212 742.7 509 74.5
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.7e-211 738.4 504 70.0
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.4e-210 735.7 410 86.1
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.3e-210 734.6 510 73.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 2.0e-204 716.1 397 88.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 8.5e-200 700.7 491 66.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.1e-198 694.5 499 71.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 5.5e-191 671.4 379 86.8
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.4e-186 656.0 514 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.7e-185 652.5 505 63.4
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 7.0e-178 627.9 419 77.1
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 9.5e-175 617.5 346 88.2
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 6.8e-173 611.3 344 86.3
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.7e-153 546.2 515 56.3
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 5.1e-152 542.0 491 53.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 2.5e-151 539.7 355 75.8
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 3.8e-147 525.8 273 90.8
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 4.8e-142 508.8 266 89.1
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.1e-138 495.0 356 71.9
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 8.7e-136 488.0 510 50.2
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 6.2e-134 481.9 275 86.5
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.8e-125 453.8 502 47.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.0e-120 436.4 285 77.5
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.0e-95 354.0 188 88.8
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 6.5e-83 312.4 421 40.6
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.2e-62 244.2 362 43.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 3.7e-62 243.4 325 44.9
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.5e-42 177.6 95 83.2
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 4.7e-41 173.3 93 88.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 3.9e-27 127.1 79 72.2
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.3e-25 122.1 68 77.9
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 2.7e-20 104.4 68 66.2
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 4.3e-18 97.1 57 78.9
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.0e-15 88.2 125 45.6
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 4.5e-15 87.0 71 62.0
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 7.9e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.1e-08 65.9 35 82.9


User provided reference genes

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