Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 0.0e+00 1431.4 749 100.0
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 0.0e+00 1257.3 759 85.9
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 0.0e+00 1245.3 750 86.0
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1237.2 762 84.8
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 0.0e+00 1157.9 762 80.7
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1119.4 768 76.4
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1112.1 766 77.2
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1103.2 767 76.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1103.2 767 76.0
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 0.0e+00 1093.2 768 75.3
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1092.4 778 74.9
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1085.5 776 74.5
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1081.2 770 74.4
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.5e-309 1065.8 777 72.2
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 732 76.2
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 1.8e-307 1058.9 772 73.1
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.8e-307 1057.0 777 71.9
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.3e-305 1052.7 728 75.3
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 1.7e-305 1052.4 770 71.9
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 2.2e-305 1052.0 772 72.2
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 4.9e-305 1050.8 777 72.2
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.9e-305 1050.8 783 72.0
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.9e-305 1050.8 785 71.8
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.1e-304 1049.7 777 72.2
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.9e-304 1048.9 780 71.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 5.4e-304 1047.3 773 72.3
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 1.6e-303 1045.8 721 75.9
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 2.1e-303 1045.4 779 71.8
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 6.0e-303 1043.9 783 71.5
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 6.0e-303 1043.9 780 71.9
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 1.7e-302 1042.3 768 71.5
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 5.1e-302 1040.8 773 71.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 1.1e-301 1039.6 726 74.2
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 1.2e-300 1036.2 724 73.3
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 3.6e-300 1034.6 750 71.1
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 1.1e-299 1033.1 777 70.0
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 3.1e-299 1031.6 775 70.1
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 9.0e-299 1030.0 784 70.3
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 5.8e-298 1027.3 761 71.1
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 2.2e-297 1025.4 777 69.6
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 2.9e-297 1025.0 769 71.0
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 4.9e-297 1024.2 760 70.5
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.1e-296 1023.1 780 69.4
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.1e-296 1023.1 766 70.4
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.9e-296 1022.3 791 69.7
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 4.2e-296 1021.1 768 71.0
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 5.4e-296 1020.8 781 69.5
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 5.4e-296 1020.8 764 70.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 9.3e-296 1020.0 764 70.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 1.2e-295 1019.6 764 70.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 2.1e-295 1018.8 769 69.2
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.7e-294 1015.8 711 75.2
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.3e-294 1015.4 774 69.4
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.5e-293 1011.9 768 68.5
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.1e-291 1006.5 778 68.8
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 2.4e-291 1005.4 758 70.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 2.4e-291 1005.4 760 69.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 3.1e-291 1005.0 769 68.9
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 4.0e-291 1004.6 773 68.7
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 5.3e-291 1004.2 697 73.6
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.2e-290 1003.0 771 69.0
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 1.5e-290 1002.7 791 68.1
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.3e-289 999.6 731 72.1
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 2.2e-289 998.8 765 69.3
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 6.4e-289 997.3 765 69.7
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 8.4e-289 996.9 711 72.7
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.4e-288 995.3 802 66.8
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.1e-285 986.5 731 72.0
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.1e-285 986.5 730 71.9
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 5.6e-285 984.2 814 65.4
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.4e-283 979.5 721 70.2
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.8e-283 979.2 726 71.3
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 3.4e-282 974.9 700 72.1
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 9.9e-282 973.4 730 71.4
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.3e-281 973.0 730 71.1
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.2e-281 972.2 753 68.5
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.9e-281 971.8 731 71.1
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.9e-281 971.8 780 67.3
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 5.5e-280 967.6 720 71.1
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 5.5e-280 967.6 719 71.2
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 7.1e-280 967.2 720 71.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.6e-279 966.1 719 70.9
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.5e-277 958.7 730 70.1
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 3.7e-276 954.9 829 63.0
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 4.8e-276 954.5 717 70.4
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 5.3e-275 951.0 772 66.7
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.0e-273 946.8 762 65.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.4e-272 943.0 646 75.4
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.5e-269 932.9 692 71.1
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.8e-268 928.7 725 67.2
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.4e-267 926.4 712 68.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.4e-267 925.6 731 66.2
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 2.4e-267 925.6 671 72.4
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 3.8e-265 918.3 727 68.2
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.3e-261 905.2 765 65.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 5.5e-256 887.9 728 66.1
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.3e-220 770.4 717 58.3
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 8.3e-220 767.7 714 58.4
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.1e-219 765.8 548 71.2
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.7e-218 762.7 548 71.0
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.5e-216 756.9 623 68.1
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.5e-210 735.7 718 54.6
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.6e-210 735.3 725 54.2
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.3e-209 733.0 747 54.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.4e-196 688.3 541 61.6
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 3.3e-192 676.0 531 63.7
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 3.8e-188 662.5 529 63.1
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.3e-169 600.9 532 57.7
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 9.6e-168 594.7 398 74.1
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-166 591.3 414 72.5
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.2e-141 508.1 414 61.4
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 4.1e-134 483.0 342 72.5
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.2e-131 473.4 269 82.9
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 2.8e-90 337.4 489 41.5
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.0e-88 331.3 606 39.6
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 2.8e-82 310.8 269 62.5
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.2e-79 301.2 672 33.2
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.9e-79 300.8 270 57.8
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.1e-76 290.0 337 50.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.6e-66 257.3 585 32.8
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 7.1e-62 243.0 347 45.2
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 6.5e-39 166.8 99 76.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 3.9e-36 157.5 83 83.1
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.7e-31 142.1 122 65.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.8e-31 141.0 152 56.6
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 6.9e-25 120.2 127 54.3
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 2.3e-20 105.1 54 83.3
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 1.2e-16 92.8 135 40.0
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 5.9e-16 90.5 99 50.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 4.2e-14 84.3 82 59.8
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-11 76.3 74 59.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.7e-11 73.9 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 3.1e-09 68.2 72 52.8
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.5e-06 57.4 79 43.0


User provided reference genes

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