Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.6e-176 622.9 361 100.0
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 2.7e-131 472.6 349 73.1
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 7.5e-118 427.9 352 67.6
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 3.9e-114 415.6 350 68.6
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 3.9e-114 415.6 350 68.6
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 3.2e-108 396.0 301 69.8
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.0e-106 391.0 295 68.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 8.6e-106 387.9 296 68.6
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.1e-103 380.9 352 59.7
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 1.8e-103 380.2 331 62.8
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 2.3e-98 363.2 285 65.6
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 3.1e-95 352.8 294 65.3
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 2.0e-86 323.6 235 66.0
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.3e-85 320.9 305 57.0
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 8.4e-85 318.2 320 54.7
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.4e-84 316.6 311 54.0
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 3.2e-84 316.2 344 51.2
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 7.1e-84 315.1 300 58.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 3.5e-83 312.8 270 62.6
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.0e-82 311.2 304 56.2
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.0e-82 311.2 295 59.0
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.3e-82 310.8 281 58.7
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.3e-82 310.8 307 53.1
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 2.3e-82 310.1 313 54.6
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 3.0e-82 309.7 256 62.1
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 3.9e-82 309.3 281 58.4
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.6e-82 308.5 255 61.6
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.5e-81 307.4 280 56.8
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.9e-81 307.0 259 59.5
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.5e-81 306.6 306 54.9
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 4.3e-81 305.8 240 65.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 9.6e-81 304.7 307 53.7
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 2.1e-80 303.5 265 61.1
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 2.8e-80 303.1 280 55.7
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.8e-80 303.1 305 55.4
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 3.6e-80 302.8 219 65.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.1e-79 301.2 211 69.2
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.4e-79 300.8 306 53.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.4e-79 300.8 279 58.1
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.8e-79 300.4 278 55.4
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.8e-79 300.4 255 59.2
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 2.4e-79 300.1 256 59.4
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 5.3e-79 298.9 269 59.1
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.2e-78 297.7 255 60.8
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 1.2e-78 297.7 254 59.1
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 2.0e-78 297.0 249 61.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 3.4e-78 296.2 299 52.8
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 4.5e-78 295.8 258 58.5
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.5e-78 295.8 249 60.6
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.8e-78 295.4 250 62.0
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.2e-77 293.5 229 62.0
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.2e-77 293.5 299 53.2
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 4.9e-77 292.4 273 56.0
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.2e-76 289.3 229 61.1
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 5.4e-76 288.9 245 60.4
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 7.1e-76 288.5 249 60.2
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 7.1e-76 288.5 245 61.2
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 2.1e-75 287.0 210 65.7
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.3e-74 283.5 228 62.7
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.0e-74 283.1 229 59.8
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 5.1e-74 282.3 261 57.9
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.1e-73 281.2 234 59.8
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.5e-73 280.8 264 56.1
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.9e-73 280.4 225 64.4
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.9e-73 280.4 249 58.6
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 4.3e-73 279.3 296 51.7
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.3e-73 279.3 279 57.3
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 5.6e-73 278.9 234 59.8
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.6e-72 277.3 271 56.1
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 3.6e-72 276.2 297 50.5
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 4.8e-72 275.8 316 51.3
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 4.8e-72 275.8 264 54.5
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 4.8e-72 275.8 238 61.3
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.8e-71 273.9 252 58.7
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-71 273.9 297 49.8
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.4e-71 273.5 256 57.4
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.9e-71 271.9 197 65.5
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 4.5e-70 269.2 288 51.4
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 5.8e-70 268.9 260 57.3
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.3e-69 267.7 222 61.3
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 3.8e-69 266.2 271 53.1
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 6.4e-69 265.4 226 58.0
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 8.4e-69 265.0 269 54.3
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 8.4e-69 265.0 248 54.4
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.1e-68 264.6 277 54.5
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.4e-68 264.2 231 58.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.2e-68 263.1 255 52.9
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 5.5e-68 262.3 251 57.0
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 7.1e-68 261.9 255 52.9
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 2.1e-67 260.4 299 52.5
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 2.7e-67 260.0 278 54.3
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 3.9e-66 256.1 291 51.9
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 2.8e-64 250.0 290 50.0
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 2.4e-63 246.9 220 57.3
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.4e-63 246.9 232 55.2
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 5.8e-62 242.3 337 46.0
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 7.6e-62 241.9 314 48.7
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 8.4e-61 238.4 239 51.0
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 7.9e-59 231.9 208 56.7
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.3e-56 224.6 244 50.4
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 3.1e-55 219.9 197 58.9
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 3.8e-53 213.0 250 50.4
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 9.3e-52 208.4 241 47.7
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.8e-47 194.1 216 49.1
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 5.3e-47 192.6 216 49.1
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 7.7e-46 188.7 273 41.8
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.3e-45 188.0 187 51.9
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.2e-45 187.2 187 54.5
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.1e-43 179.1 196 47.4
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.3e-42 177.2 118 73.7
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 8.8e-42 175.3 121 71.1
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 5.5e-36 156.0 172 45.9
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.6e-35 153.3 110 70.9
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 2.3e-34 150.6 96 77.1
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 4.4e-33 146.4 195 43.6
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 4.4e-33 146.4 195 43.6
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.1e-27 127.5 170 43.5
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 4.7e-27 126.3 224 36.2
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 5.2e-26 122.9 173 42.8
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 8.5e-21 105.5 141 42.6
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 3.4e-17 93.6 104 44.2
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 3.7e-16 90.1 126 39.7
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 4.1e-15 86.7 61 63.9
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.0e-13 82.0 134 40.3
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 1.3e-13 81.6 154 38.3
Medtr1g054730 Medicago truncatula HOM05D000559 ORTHO05D000596 8.0e-11 72.4 123 36.6
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.3e-10 70.9 48 75.0
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.2e-09 68.6 126 38.9
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.6e-09 67.4 64 53.1
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.4e-09 67.0 49 63.3
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 5.7e-09 66.2 122 33.6
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 7.5e-09 65.9 79 39.2
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.2e-08 64.3 135 36.3
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.8e-08 63.9 123 35.0
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.8e-08 63.9 116 37.9
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 4.9e-08 63.2 122 32.0
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 4.9e-08 63.2 133 32.3
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.1e-07 62.0 153 30.1
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.4e-07 61.6 123 33.3
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.4e-07 60.8 133 32.3
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 3.1e-07 60.5 118 33.9
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 4.1e-07 60.1 128 32.8
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 5.4e-07 59.7 117 33.3
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 5.4e-07 59.7 134 30.6
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 7.0e-07 59.3 125 34.4
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.2e-06 58.5 125 32.0
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.6e-06 58.2 117 34.2
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 2.0e-06 57.8 57 50.9
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 3.5e-06 57.0 101 36.6
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 7.8e-06 55.8 120 33.3


User provided reference genes

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