Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 3506.1 1851 100.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 3184.0 1865 90.1
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 3155.5 1865 89.9
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 3143.2 1865 89.3
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 3045.8 1868 87.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3021.9 1875 85.8
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3001.1 1875 83.6
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2994.5 1875 85.0
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2940.2 1875 83.0
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2937.1 1875 82.6
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2899.8 1894 82.8
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2871.6 1918 81.3
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2852.0 1882 81.2
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2815.4 1873 80.1
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2799.6 1760 85.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2614.3 1905 74.2
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2608.2 1898 74.1
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2542.7 1898 72.0
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2532.3 1901 72.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2513.0 1883 72.1
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2503.8 1872 71.5
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2484.5 1896 70.2
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2484.1 1897 71.2
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2483.8 1893 70.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2480.7 1897 70.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2476.8 1904 70.3
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2471.8 1904 69.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2469.1 1890 71.5
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2469.1 1913 68.4
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2466.8 1890 70.8
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2459.9 1886 70.8
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2446.0 1889 70.9
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2408.3 2105 64.2
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2403.6 1885 69.5
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2388.2 1884 68.1
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2384.8 1890 68.6
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2376.3 1891 69.1
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2374.0 1879 69.5
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2365.1 1733 74.1
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2348.5 1981 66.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2337.4 2097 64.6
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2337.0 1946 66.6
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2322.4 1894 68.4
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2312.0 1877 66.9
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2302.3 1926 66.8
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2295.4 1890 66.4
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2288.8 1886 68.7
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2283.1 1886 68.7
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2281.9 1881 67.6
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2275.0 1886 65.6
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2272.7 1896 67.5
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2256.1 2220 57.9
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2254.2 1711 69.7
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2253.4 1881 65.4
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2246.9 1861 66.5
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2246.1 1852 66.3
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2240.7 1907 66.5
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2239.9 1885 65.3
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2233.4 1734 71.3
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2223.4 1898 64.3
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2221.8 1885 63.9
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2219.9 1875 66.1
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2213.7 1878 65.9
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2201.4 1873 64.6
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2201.4 1906 65.0
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2192.5 1878 65.3
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2190.6 1853 65.6
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2165.2 1867 64.6
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2164.8 1870 64.2
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2161.7 1907 64.2
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2156.7 1909 63.3
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2155.6 1905 64.4
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2153.3 1911 64.2
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2150.9 1870 65.1
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2141.7 1791 65.4
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2138.2 1867 64.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2130.9 1848 64.3
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2125.5 1867 64.0
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2122.8 1911 63.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2115.9 1867 63.8
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2108.6 1892 64.1
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2105.9 1975 61.1
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2083.1 1923 62.2
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2069.7 1970 58.8
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2048.9 1884 61.0
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 2046.9 1880 62.0
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1977.6 1323 75.2
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1924.1 1512 71.3
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1835.5 1999 54.6
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1835.1 1500 67.8
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1812.3 1858 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1756.5 1976 53.4
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1691.8 1744 54.4
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1652.5 1896 51.5
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1566.2 1866 52.5
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1455.3 937 78.4
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1441.0 1266 66.6
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1424.8 1211 68.4
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1410.2 1290 65.4
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1393.3 1077 69.7
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1366.3 1465 57.3
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1265.0 1210 61.9
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1187.6 851 70.7
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1146.0 944 66.0
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1113.6 1092 62.0
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.3e-301 1040.8 1365 45.0
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.2e-288 997.7 674 74.9
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 6.7e-287 991.9 1129 55.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 2.3e-279 966.8 686 75.2
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.9e-243 845.9 862 60.7
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 3.6e-224 783.5 1108 45.3
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.9e-221 773.9 1319 37.7
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.6e-211 741.5 957 51.0
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 6.0e-203 713.0 448 82.1
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 5.7e-169 600.1 374 78.6
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.1e-155 555.1 1296 32.6
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.5e-149 533.5 366 72.7
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.2e-140 504.6 369 68.6
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.8e-136 490.7 367 68.1
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.6e-109 400.6 497 49.3
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 6.4e-104 384.0 293 65.5
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.3e-93 349.7 524 55.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 8.1e-91 340.5 299 62.2
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.4e-90 339.7 239 73.6
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 4.4e-89 334.7 214 75.7
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.1e-87 330.1 561 43.7
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.6e-86 324.7 262 67.2
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 5.1e-85 321.2 170 95.9
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.5e-84 318.9 198 79.3
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.8e-82 312.8 1108 27.3
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 3.2e-79 302.0 1550 25.2
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 8.7e-69 267.3 262 56.1
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.3e-60 238.8 226 61.5
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.4e-57 228.8 544 33.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.0e-53 217.2 243 53.1
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.3e-52 212.2 170 62.4
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 4.3e-52 211.8 188 59.6
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.6e-49 201.1 235 51.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 1.4e-47 196.8 163 60.1
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.1e-46 191.4 278 47.5
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.8e-45 189.9 396 40.7
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.1e-42 180.6 221 48.9
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 1.6e-38 166.8 106 73.6
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 8.8e-37 161.0 89 83.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.9e-31 143.3 126 63.5
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 4.4e-28 132.1 143 58.7
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 2.8e-27 129.4 75 89.3
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 4.8e-27 128.6 105 69.5
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 7.7e-25 121.3 69 89.9
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 1.3e-24 120.6 78 82.1
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 2.9e-24 119.4 87 64.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.9e-23 116.7 148 48.0
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.5e-23 116.3 98 66.3
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.0e-21 109.4 82 61.0
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 2.0e-20 106.7 75 73.3
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 4.4e-20 105.5 61 82.0
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.8e-18 100.1 80 68.8
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 9.1e-18 97.8 58 84.5
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 9.1e-18 97.8 58 84.5
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.6e-17 97.1 88 56.8
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 7.7e-17 94.7 58 82.8
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 6.5e-16 91.7 128 46.9
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 9.4e-15 87.8 51 92.2
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.1e-14 86.7 41 97.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 8.8e-13 81.3 73 60.3
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 9.8e-12 77.8 77 55.8
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.2e-11 76.6 132 42.4
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 2.2e-11 76.6 77 61.0
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 3.7e-11 75.9 36 91.7
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.0e-09 70.1 107 43.0
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.5e-07 63.9 111 35.1
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 9.5e-07 61.2 59 55.9


User provided reference genes

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