Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 0.0e+00 2011.1 1135 100.0
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 0.0e+00 1322.0 1387 61.5
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 2.4e-287 992.6 1217 56.5
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 7.2e-284 981.1 1182 54.1
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 6.4e-224 781.9 1343 47.3
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 3.7e-219 766.1 1287 47.6
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 7.6e-217 758.4 1224 49.3
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 7.7e-201 705.3 1363 44.8
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 3.2e-183 646.7 1336 41.2
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 1.1e-178 631.7 1475 39.7
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 5.0e-160 569.7 1419 35.1
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.9e-152 543.9 1151 37.5
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 5.0e-152 543.1 1206 36.2
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 8.1e-142 509.2 1245 35.6
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 7.8e-137 492.7 1173 38.8
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.2e-134 485.3 1173 39.0
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 7.2e-66 256.9 886 30.4
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 2.0e-60 238.8 882 30.0
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 2.2e-59 235.3 834 27.9
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.6e-57 229.2 1167 25.7
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 1.8e-56 225.7 1161 27.0
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 2.3e-56 225.3 1146 25.9
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 3.0e-56 224.9 1200 26.7
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 8.8e-56 223.4 1138 25.9
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 8.3e-54 216.9 1151 25.7
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.0e-52 212.2 1162 25.0
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 7.7e-52 210.3 1136 26.7
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.2e-51 208.8 888 27.8
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 2.1e-49 202.2 1140 25.9
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.0e-48 199.9 1172 26.5
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 7.5e-47 193.7 1189 24.8
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 7.5e-47 193.7 1133 25.2
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.1e-45 189.9 1141 26.9
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.8e-45 189.1 1167 26.2
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 2.0e-39 169.1 915 25.5
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.4e-38 164.1 1163 25.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.4e-37 162.2 1143 24.8
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 7.0e-37 160.6 1163 25.5
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.6e-36 159.5 520 31.2
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 5.9e-36 157.5 671 29.2
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 7.8e-36 157.1 935 25.5
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.0e-35 156.8 887 26.2
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.1e-33 149.1 584 31.7
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 2.3e-32 145.6 545 30.6
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.6e-31 142.1 572 26.2
Glyma.01G217800 Glycine max HOM05D003520 ORTHO05D003332 2.0e-28 132.5 339 34.8
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.0e-27 130.2 527 28.3
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 3.0e-27 128.6 452 31.2
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 5.0e-27 127.9 213 33.3
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 6.6e-27 127.5 1147 23.4
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 8.6e-27 127.1 263 34.2
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 8.6e-27 127.1 655 26.1
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 8.6e-27 127.1 541 26.8
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.1e-26 126.7 465 38.1
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 1.6e-25 122.9 587 26.9
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 4.7e-25 121.3 283 32.2
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.1e-24 120.2 248 35.1
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.3e-24 119.0 898 24.3
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 8.9e-24 117.1 605 32.7
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.0e-23 115.9 551 26.5
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 7.5e-23 114.0 227 33.5
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 7.5e-23 114.0 328 30.8
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.7e-22 112.8 539 25.4
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 2.2e-22 112.5 517 26.7
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 6.4e-22 110.9 239 31.8
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 2.4e-21 109.0 221 32.6
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 4.1e-21 108.2 250 31.2
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 2.1e-20 105.9 717 26.4
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.0e-19 103.6 585 25.0
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 1.0e-19 103.6 224 35.7
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 1.3e-19 103.2 554 23.5
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.7e-19 102.8 288 27.8
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 3.0e-19 102.1 261 43.7
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 5.1e-19 101.3 568 25.2
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 5.1e-19 101.3 231 29.9
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 6.6e-19 100.9 817 22.0
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 8.6e-19 100.5 213 34.7
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 8.6e-19 100.5 452 27.7
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 8.6e-19 100.5 539 29.7
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 8.6e-19 100.5 932 22.5
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 7.3e-18 97.4 688 24.6
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 7.3e-18 97.4 398 26.9
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 9.5e-18 97.1 560 24.3
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 9.5e-18 97.1 560 24.3
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.6e-17 96.3 855 21.4
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 3.6e-17 95.1 275 28.0
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.6e-17 95.1 259 27.0
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 6.2e-17 94.4 235 32.3
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 6.2e-17 94.4 562 24.6
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 8.1e-17 94.0 599 24.4
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 1.1e-16 93.6 237 32.1
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.4e-16 93.2 465 26.0
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.4e-16 93.2 401 26.9
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.4e-16 93.2 251 27.1
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 4.0e-16 91.7 359 25.3
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 5.2e-16 91.3 509 23.8
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 6.8e-16 90.9 573 22.7
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.0e-15 89.4 228 30.3
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 2.6e-15 89.0 415 28.4
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 2.6e-15 89.0 116 46.6
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 2.6e-15 89.0 582 31.1
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 3.4e-15 88.6 621 23.3
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 4.4e-15 88.2 517 23.2
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 7.6e-15 87.4 142 40.1
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.3e-14 86.7 244 31.6
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.7e-14 86.3 333 29.7
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 2.2e-14 85.9 785 22.8
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.9e-14 85.5 564 23.9
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 4.9e-14 84.7 75 57.3
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 1.1e-13 83.6 69 55.1
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 1.1e-13 83.6 862 22.5
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.4e-13 83.2 284 27.1
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.4e-13 83.2 843 23.5
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.4e-13 83.2 824 22.6
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.4e-13 83.2 90 45.6
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.9e-13 82.8 392 26.5
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 1.9e-13 82.8 250 34.8
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 4.1e-13 81.6 363 25.9
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 7.1e-13 80.9 569 22.8
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 9.2e-13 80.5 262 40.1
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.2e-12 80.1 539 23.2
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.6e-12 79.7 546 24.4
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.6e-12 79.7 240 28.8
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 2.7e-12 79.0 236 28.8
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 4.6e-12 78.2 539 24.7
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 6.0e-12 77.8 388 25.8
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.0e-11 77.0 545 27.0
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 1.3e-11 76.6 591 23.2
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.3e-11 76.6 85 49.4
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 2.3e-11 75.9 408 24.3
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.3e-11 75.9 384 25.5
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.3e-11 75.9 367 25.9
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 2.3e-11 75.9 585 22.2
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 3.9e-11 75.1 74 51.4
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 3.9e-11 75.1 564 23.0
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 6.6e-11 74.3 232 45.3
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 6.6e-11 74.3 72 47.2
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 8.6e-11 73.9 390 25.4
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.1e-10 73.6 84 45.2
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 1.5e-10 73.2 267 28.1
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 1.5e-10 73.2 448 25.2
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 1.5e-10 73.2 207 36.7
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.5e-10 72.4 62 54.8
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 2.5e-10 72.4 875 22.1
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 4.3e-10 71.6 402 25.9
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 4.3e-10 71.6 685 23.8
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 7.3e-10 70.9 85 42.4
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 9.6e-10 70.5 247 24.7
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.6e-09 69.7 77 45.5
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 1.6e-09 69.7 387 23.3
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 1.6e-09 69.7 196 27.6
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.1e-09 69.3 386 24.6
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 2.8e-09 68.9 443 24.6
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 3.6e-09 68.6 398 24.4
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.1e-08 67.0 616 23.5
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 1.4e-08 66.6 281 29.2
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.4e-08 66.6 420 24.5
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 1.8e-08 66.2 69 49.3
ECA238G0250 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.0e-08 65.1 58 51.7
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 6.9e-08 64.3 77 46.8
ECA238G4163 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.9e-08 64.3 52 55.8
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 8.9e-08 63.9 546 22.7
ECA238G0526 Erigeron canadensis HOM05D002097 ORTHO05D003332 8.9e-08 63.9 58 51.7
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 2.6e-07 62.4 277 28.5
Sabra12G0103700 Salix brachista HOM05D003520 ORTHO05D003332 2.6e-07 62.4 255 25.9
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.4e-07 62.0 78 43.6
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.4e-07 62.0 64 43.8
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 4.4e-07 61.6 349 23.2
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 7.6e-07 60.8 74 45.9
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.6e-07 60.8 78 43.6
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 9.9e-07 60.5 293 23.2
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 1.7e-06 59.7 59 54.2
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 2.9e-06 58.9 70 41.4
MELO3C033074.2 Cucumis melo HOM05D003520 ORTHO05D003332 2.9e-06 58.9 71 43.7
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.9e-06 58.9 108 38.0
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.9e-06 58.2 81 40.7
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 4.9e-06 58.2 81 40.7
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 4.9e-06 58.2 376 23.4
ECA238G2527 Erigeron canadensis HOM05D002097 ORTHO05D002248 6.4e-06 57.8 51 51.0
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 8.4e-06 57.4 60 41.7
CDE02G3421 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 8.4e-06 57.4 549 22.6
Os08g0206700 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 8.4e-06 57.4 45 57.8


User provided reference genes

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