Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1272 Trifolium pratense HOM05D003633 ORTHO05D043858 2.5e-30 134.8 69 100.0
TPR.G1293 Trifolium pratense HOM05D003633 ORTHO05D004245 1.7e-23 112.1 65 87.7
LjContig00564g0017285 Lotus japonicus HOM05D003633 ORTHO05D004245 3.9e-23 110.9 65 89.2
LjContig00564g0013149 Lotus japonicus HOM05D003633 ORTHO05D004245 2.5e-22 108.2 65 86.2
TPR.G13306 Trifolium pratense HOM05D003633 ORTHO05D004245 2.5e-22 108.2 65 87.7
Glyma.02G271900 Glycine max HOM05D003633 ORTHO05D004245 9.6e-22 106.3 65 86.2
Phvul.009G196800 Phaseolus vulgaris HOM05D003633 ORTHO05D004245 9.6e-22 106.3 65 86.2
Medtr1g051825 Medicago truncatula HOM05D003633 ORTHO05D004245 1.2e-21 105.9 65 86.2
Psat2g023680 Pisum sativum HOM05D003633 ORTHO05D004245 2.1e-21 105.1 65 84.6
arahy.Tifrunner.gnm1.ann1.65YTHF Arachis hypogaea HOM05D003633 ORTHO05D004245 3.6e-21 104.4 65 83.1
arahy.Tifrunner.gnm1.ann1.HKS14U Arachis hypogaea HOM05D003633 ORTHO05D004245 3.6e-21 104.4 65 83.1
arahy.Tifrunner.gnm1.ann1.Z8K404 Arachis hypogaea HOM05D003633 ORTHO05D004245 3.6e-21 104.4 65 83.1
Ca_06129_v3 Cicer arietinum L. HOM05D003633 ORTHO05D004245 3.6e-21 104.4 65 84.6
Lalb_Chr04g0249821 Lupinus albus HOM05D003633 ORTHO05D004245 3.6e-21 104.4 65 81.5
VMungo1309G0828 Vigna mungo HOM05D003633 ORTHO05D004245 4.7e-21 104.0 65 84.6
Glyma.14G044900 Glycine max HOM05D003633 ORTHO05D004245 8.1e-21 103.2 65 83.1
arahy.Tifrunner.gnm1.ann1.KL7BWI Arachis hypogaea HOM05D003633 ORTHO05D004245 2.4e-20 101.7 65 81.5
Medtr3g110055 Medicago truncatula HOM05D003633 ORTHO05D004245 4.9e-18 94.0 65 75.4
THA.LOC104800499 Tarenaya hassleriana HOM05D003633 ORTHO05D004245 6.4e-18 93.6 65 67.7
CiPaw.13G125200 Carya illinoinensis HOM05D003633 ORTHO05D004245 8.4e-18 93.2 65 72.3
ClCG02G024050 Citrullus lanatus HOM05D003633 ORTHO05D004245 1.4e-17 92.4 65 70.8
MELO3C014687.2 Cucumis melo HOM05D003633 ORTHO05D004245 1.4e-17 92.4 65 70.8
Potri.009G155200 Populus trichocarpa HOM05D003633 ORTHO05D004245 1.4e-17 92.4 65 72.3
CsaV3_4G023280 Cucumis sativus L. HOM05D003633 ORTHO05D004245 1.9e-17 92.0 65 70.8
Prupe.6G149900 Prunus persica HOM05D003633 ORTHO05D004245 3.2e-17 91.3 65 72.3
Sabra09G0121700 Salix brachista HOM05D003633 ORTHO05D004245 3.2e-17 91.3 65 70.8
Cpa.g.sc103.58 Carica papaya HOM05D003633 ORTHO05D004245 4.2e-17 90.9 65 70.8
CANSAT54G1723 Cannabis sativa HOM05D003633 ORTHO05D004245 5.4e-17 90.5 65 72.3
GSVIVG01033181001 Vitis vinifera HOM05D003633 ORTHO05D004245 9.3e-17 89.7 65 70.8
A04p20650 Brassica napus HOM05D003633 ORTHO05D004245 1.2e-16 89.4 65 70.8
BraA04t17638Z Brassica rapa HOM05D003633 ORTHO05D004245 1.2e-16 89.4 65 70.8
Atru.chr3.3038 Acer truncatum HOM05D003633 ORTHO05D004245 1.6e-16 89.0 65 67.7
Thecc.09G266900 Theobroma cacao HOM05D003633 ORTHO05D004245 1.6e-16 89.0 65 69.2
Manes.06G005500 Manihot esculenta HOM05D003633 ORTHO05D004245 2.1e-16 88.6 64 70.3
BcaB06g28118 Brassica carinata HOM05D003633 ORTHO05D004245 2.7e-16 88.2 65 69.2
BcaC02g08276 Brassica carinata HOM05D003633 ORTHO05D004245 2.7e-16 88.2 65 69.2
C04p56430 Brassica napus HOM05D003633 ORTHO05D004245 2.7e-16 88.2 65 69.2
BolC4t27174H Brassica oleracea HOM05D003633 ORTHO05D004245 2.7e-16 88.2 65 69.2
Sp4g09970 Schrenkiella parvula HOM05D003633 ORTHO05D004245 2.7e-16 88.2 65 69.2
Gohir.D05G079700 Gossypium hirsutum HOM05D003633 ORTHO05D004245 3.5e-16 87.8 64 70.3
MD11G1177700 Malus domestica HOM05D003633 ORTHO05D004245 3.5e-16 87.8 65 67.7
COL.COLO4_25352 Corchorus olitorius HOM05D003633 ORTHO05D004245 6.0e-16 87.0 65 67.7
RcHm_v2.0_Chr1g0362081 Rosa chinensis HOM05D003633 ORTHO05D004245 7.8e-16 86.7 65 69.2
Thhalv10001887m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 1.0e-15 86.3 65 67.7
Gohir.A05G076900 Gossypium hirsutum HOM05D003633 ORTHO05D004245 1.0e-15 86.3 64 68.8
Gorai.009G081300 Gossypium raimondii HOM05D003633 ORTHO05D004245 1.0e-15 86.3 64 68.8
MBI05_g07506_MAGBIO Magnolia biondii HOM05D003633 ORTHO05D004245 1.3e-15 85.9 65 67.7
Duzib170G1043 Durio zibethinus HOM05D003633 ORTHO05D004245 1.7e-15 85.5 65 67.7
TWI75G0107 Tripterygium wilfordii HOM05D003633 ORTHO05D004245 1.7e-15 85.5 65 67.7
TAR636G3505 Trochodendron aralioides HOM05D003633 ORTHO05D004245 1.7e-15 85.5 65 66.2
Nn2g11908 Nelumbo nucifera HOM05D003633 ORTHO05D004245 3.0e-15 84.7 65 66.2
Ciclev10027700m.g Citrus clementina HOM05D003633 ORTHO05D004245 5.1e-15 84.0 66 63.6
BcaC01g04925 Brassica carinata HOM05D003633 ORTHO05D004245 1.9e-14 82.0 65 66.2
A03p26730 Brassica napus HOM05D003633 ORTHO05D004245 1.9e-14 82.0 65 66.2
C03p32030 Brassica napus HOM05D003633 ORTHO05D004245 1.9e-14 82.0 65 66.2
BolC3t15547H Brassica oleracea HOM05D003633 ORTHO05D004245 1.9e-14 82.0 65 66.2
BraA03t11884Z Brassica rapa HOM05D003633 ORTHO05D004245 1.9e-14 82.0 65 66.2
CARHR119550 Cardamine hirsuta HOM05D003633 ORTHO05D004245 3.3e-14 81.3 65 61.5
Sc12g0000470 Simmondsia chinensis HOM05D003633 ORTHO05D004245 3.3e-14 81.3 64 62.5
Carub.0004s0770 Capsella rubella HOM05D003633 ORTHO05D004245 5.6e-14 80.5 65 64.6
ECA238G1454 Erigeron canadensis HOM05D003633 ORTHO05D004245 1.6e-13 79.0 64 60.9
EL10Ac7g16251 Beta vulgaris HOM05D003633 ORTHO05D004245 2.1e-13 78.6 61 63.9
CSS0028100 Camellia sinensis var. sinensis HOM05D003633 ORTHO05D004245 2.8e-13 78.2 64 62.5
HPP92_021530 Vanilla planifolia HOM05D003633 ORTHO05D004245 2.8e-13 78.2 65 61.5
HPP92_021489 Vanilla planifolia HOM05D003633 ORTHO05D004245 3.6e-13 77.8 65 61.5
Aqoxy7G01992 Aquilegia oxysepala HOM05D003633 ORTHO05D004245 4.8e-13 77.4 65 63.1
Dinv32833 Davidia involucrata HOM05D003633 ORTHO05D004245 6.2e-13 77.0 65 60.0
Nitab4.5_0000271g0010 Nicotiana tabacum HOM05D003633 ORTHO05D004245 6.2e-13 77.0 65 61.5
Sed0007253 Sechium edule HOM05D003633 ORTHO05D004245 6.2e-13 77.0 54 70.4
Zm00001eb297550 Zea mays HOM05D003633 ORTHO05D004245 6.2e-13 77.0 65 64.6
Actinidia06352 Actinidia chinensis HOM05D003633 ORTHO05D004245 8.1e-13 76.6 65 58.5
Actinidia22465 Actinidia chinensis HOM05D003633 ORTHO05D004245 8.1e-13 76.6 65 58.5
PSO017G3356 Papaver somniferum HOM05D003633 ORTHO05D004245 8.1e-13 76.6 65 60.0
AT2G27170 Arabidopsis thaliana HOM05D003633 ORTHO05D004245 1.1e-12 76.3 65 60.0
Aa31LG5G8590 Aethionema arabicum HOM05D003633 ORTHO05D004245 1.4e-12 75.9 49 71.4
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.4e-12 75.9 64 60.9
Ah.08g222470 Amaranthus hybridus HOM05D003633 ORTHO05D004245 1.8e-12 75.5 60 63.3
Rhsim01G0197900 Rhododendron simsii HOM05D003633 ORTHO05D004245 3.1e-12 74.7 65 58.5
vmacro21588 Vaccinium macrocarpon HOM05D003633 ORTHO05D004245 3.1e-12 74.7 65 60.0
SalBow3G2138 Salvia bowleyana HOM05D003633 ORTHO05D004245 4.0e-12 74.3 65 58.5
AL4G20920 Arabidopsis lyrata HOM05D003633 ORTHO05D004245 5.3e-12 73.9 65 58.5
BcaB01g03052 Brassica carinata HOM05D003633 ORTHO05D004245 5.3e-12 73.9 60 63.3
Nitab4.5_0003359g0030 Nicotiana tabacum HOM05D003633 ORTHO05D004245 5.3e-12 73.9 65 58.5
Cc01_g08350 Coffea canephora HOM05D003633 ORTHO05D004245 9.0e-12 73.2 65 56.9
Peaxi162Scf00355g00113 Petunia axillaris HOM05D003633 ORTHO05D004245 9.0e-12 73.2 65 56.9
HanXRQChr06g0181531 Helianthus annuus HOM05D003633 ORTHO05D004245 1.2e-11 72.8 64 56.2
Lj2C854G2 Lonicera japonica HOM05D003633 ORTHO05D004245 1.2e-11 72.8 64 59.4
Lj2C874G5 Lonicera japonica HOM05D003633 ORTHO05D004245 1.2e-11 72.8 64 59.4
Thhalv10023124m.g Eutrema salsugineum HOM05D003633 ORTHO05D004245 2.0e-11 72.0 58 60.3
Solyc06g073780.4 Solanum lycopersicum HOM05D003633 ORTHO05D004245 2.6e-11 71.6 64 57.8
CDE06G2316 Ceratophyllum demersum HOM05D003633 ORTHO05D004245 4.5e-11 70.9 49 65.3
Oeu058179.1 Olea europaea HOM05D003633 ORTHO05D004245 9.9e-11 69.7 65 50.8
PSO170G6842 Papaver somniferum HOM05D003633 ORTHO05D004245 1.3e-10 69.3 65 56.9
FAN04G2246 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.7e-10 68.9 65 56.9
SGA_v2.0_scaffold79G25491 Striga asiatica HOM05D003633 ORTHO05D004245 2.2e-10 68.6 65 53.8
MD03G1161700 Malus domestica HOM05D003633 ORTHO05D004245 2.9e-10 68.2 65 55.4
Eucgr.J00601 Eucalyptus grandis HOM05D003633 ORTHO05D004245 3.8e-10 67.8 52 71.2
Hma1.2p1_0218F.1_g092340 Hydrangea macrophylla HOM05D003633 ORTHO05D004245 4.9e-10 67.4 65 50.8
Hund18817 Selenicereus undatus HOM05D003633 ORTHO05D004245 4.9e-10 67.4 57 59.6
ATR0618G336 Amborella trichopoda HOM05D003633 ORTHO05D004245 6.4e-10 67.0 65 55.4
Lsat_1_v5_gn_2_27520 Lactuca sativa HOM05D003633 ORTHO05D004245 8.4e-10 66.6 64 53.1
FvH4_5g11061 Fragaria vesca HOM05D003633 ORTHO05D004245 1.9e-09 65.5 65 53.8
FAN18G2517 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.9e-09 65.5 65 53.8
FAN18G4241 Fragaria x ananassa HOM05D003633 ORTHO05D004245 1.9e-09 65.5 65 53.8
Os02g0133400 Oryza sativa ssp. japonica HOM05D003633 ORTHO05D004245 1.9e-09 65.5 65 55.4
unitig_27.g25129 Utricularia gibba HOM05D003633 ORTHO05D004245 1.9e-09 65.5 65 50.8
Migut.N02426 Erythranthe guttata HOM05D003633 ORTHO05D004245 3.2e-09 64.7 64 50.0
PGR119G0283 Punica granatum HOM05D003633 ORTHO05D004245 5.4e-09 63.9 65 52.3
Sopen06g030170 Solanum pennellii HOM05D003633 ORTHO05D004245 2.7e-08 61.6 45 62.2
AUR62001588 Chenopodium quinoa HOM05D003633 ORTHO05D004245 7.9e-08 60.1 40 67.5
AUR62020192 Chenopodium quinoa HOM05D003633 ORTHO05D004245 7.9e-08 60.1 40 67.5
Nitab4.5_0000200g0070 Nicotiana tabacum HOM05D003633 ORTHO05D004245 7.9e-08 60.1 65 50.8
Pp3c24_13420 Physcomitrium patens HOM05D003633 ORTHO05D004245 2.3e-07 58.5 57 52.6
Lsat_1_v5_gn_2_27661 Lactuca sativa HOM05D003633 ORTHO05D004245 5.1e-07 57.4 45 57.8
CDE04G1579 Ceratophyllum demersum HOM05D003633 ORTHO05D043858 1.1e-06 56.2 40 67.5
Mapoly0048s0100 Marchantia polymorpha HOM05D003633 ORTHO05D004245 1.5e-06 55.8 57 54.4
PGSC0003DMG400005912 Solanum tuberosum HOM05D003633 ORTHO05D004245 1.9e-06 55.5 40 60.0
Migut.N02425 Erythranthe guttata HOM05D003633 ORTHO05D004245 3.3e-06 54.7 41 53.7


User provided reference genes

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