Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.2e-57 226.5 131 100.0
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 4.2e-34 148.3 143 67.1
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.5e-31 139.8 138 68.8
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 1.8e-29 132.9 141 67.4
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 3.1e-29 132.1 141 56.7
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 1.5e-28 129.8 141 61.0
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 4.6e-25 118.2 132 58.3
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.8e-21 106.3 148 51.4
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 3.4e-20 102.1 133 58.6
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.4e-19 97.4 119 50.4
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 8.4e-19 97.4 115 52.2
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.1e-18 97.1 121 47.9
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.5e-18 95.9 112 51.8
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 3.2e-18 95.5 133 54.9
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 3.2e-18 95.5 64 73.4
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 5.5e-18 94.7 115 50.4
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.5e-18 94.7 115 45.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.5e-18 94.7 115 50.4
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.2e-17 93.6 63 73.0
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 2.7e-17 92.4 64 70.3
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 2.7e-17 92.4 62 71.0
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 3.5e-17 92.0 124 45.2
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 4.6e-17 91.7 95 51.6
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 4.6e-17 91.7 64 68.8
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 7.9e-17 90.9 64 68.8
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.0e-16 90.5 64 67.2
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.0e-16 90.5 64 68.8
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.3e-16 89.4 64 65.6
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 3.0e-16 89.0 131 43.5
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 6.7e-16 87.8 124 46.0
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 6.7e-16 87.8 64 67.2
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.5e-15 86.7 64 64.1
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.9e-15 86.3 64 64.1
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.9e-15 86.3 64 64.1
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 7.4e-15 84.3 64 64.1
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 9.6e-15 84.0 62 66.1
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 9.6e-15 84.0 64 67.2
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 9.6e-15 84.0 64 64.1
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.3e-14 83.6 120 41.7
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 1.3e-14 83.6 59 64.4
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 2.1e-14 82.8 56 71.4
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 2.8e-14 82.4 63 63.5
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 2.8e-14 82.4 58 69.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 3.7e-14 82.0 64 60.9
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.8e-14 81.6 61 65.6
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 6.3e-14 81.3 61 62.3
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 8.2e-14 80.9 62 59.7
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.2e-14 80.9 61 63.9
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.2e-14 80.9 61 63.9
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-13 80.5 63 57.1
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-13 80.5 63 57.1
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-13 80.5 63 57.1
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.4e-13 80.1 63 57.1
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.4e-13 80.1 63 57.1
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-13 79.7 63 57.1
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 1.8e-13 79.7 63 57.1
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.8e-13 79.7 63 57.1
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.8e-13 79.7 63 57.1
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 1.8e-13 79.7 63 57.1
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.8e-13 79.7 63 60.3
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 2.4e-13 79.3 128 36.7
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 2.4e-13 79.3 61 62.3
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 3.1e-13 79.0 63 55.6
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 3.1e-13 79.0 63 57.1
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 3.1e-13 79.0 63 55.6
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 3.1e-13 79.0 63 55.6
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.1e-13 79.0 98 48.0
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 3.1e-13 79.0 54 70.4
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 3.1e-13 79.0 65 60.0
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.1e-13 79.0 63 60.3
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 4.1e-13 78.6 62 56.5
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 4.1e-13 78.6 62 56.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.1e-13 78.6 61 62.3
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 4.1e-13 78.6 61 62.3
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 4.1e-13 78.6 61 63.9
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 9.0e-13 77.4 61 60.7
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.5e-12 76.6 61 55.7
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 2.0e-12 76.3 99 45.5
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 2.0e-12 76.3 99 45.5
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 2.0e-12 76.3 99 45.5
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 3.4e-12 75.5 59 55.9
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 3.4e-12 75.5 55 63.6
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 3.4e-12 75.5 58 58.6
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.5e-12 75.1 61 52.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.5e-12 75.1 61 52.5
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 4.5e-12 75.1 63 58.7
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 4.5e-12 75.1 99 44.4
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 5.9e-12 74.7 130 37.7
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.3e-11 73.6 63 55.6
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-11 73.6 64 59.4
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.7e-11 73.2 118 41.5
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.7e-11 73.2 63 55.6
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 2.9e-11 72.4 64 54.7
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 2.9e-11 72.4 65 55.4
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.8e-11 72.0 61 52.5
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 6.5e-11 71.2 64 56.2
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.1e-10 70.5 64 56.2
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-10 69.7 64 54.7
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 1.9e-10 69.7 64 54.7
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.5e-10 69.3 64 54.7
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.2e-10 68.6 66 53.0
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 5.5e-10 68.2 51 64.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 7.2e-10 67.8 56 57.1
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 7.2e-10 67.8 56 57.1
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 2.7e-09 65.9 54 55.6
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 2.7e-09 65.9 54 55.6
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 2.7e-09 65.9 54 55.6
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.3e-08 63.5 59 49.2
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 5.1e-08 61.6 49 57.1
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 7.4e-07 57.8 59 47.5
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 1.3e-06 57.0 58 44.8
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.6e-06 56.6 54 40.7
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 1.6e-06 56.6 59 47.5
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 2.2e-06 56.2 44 56.8
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 2.2e-06 56.2 49 49.0
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 2.2e-06 56.2 58 41.4


User provided reference genes

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