Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 4.4e-109 397.9 190 100.0
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 7.0e-99 364.0 191 92.1
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 5.9e-98 360.9 190 88.9
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 1.1e-96 356.7 190 88.4
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 2.7e-90 335.5 191 83.2
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 2.3e-86 322.4 196 78.6
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 3.1e-86 322.0 192 79.7
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 2.6e-85 318.9 192 77.6
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 4.9e-84 314.7 190 76.3
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 3.4e-77 292.0 189 70.4
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.2e-76 289.3 188 70.7
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 3.7e-76 288.5 187 70.1
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 4.9e-76 288.1 184 73.4
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 6.4e-76 287.7 188 70.2
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.1e-75 287.0 184 73.4
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.1e-75 287.0 188 70.2
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 1.1e-75 287.0 186 71.5
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 2.4e-75 285.8 188 71.3
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 2.4e-75 285.8 188 71.8
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 2.4e-75 285.8 188 71.8
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 2.4e-75 285.8 188 71.8
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 3.2e-75 285.4 184 71.7
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 7.1e-75 284.3 188 71.3
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 7.1e-75 284.3 187 70.6
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 9.2e-75 283.9 187 70.1
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 9.2e-75 283.9 188 70.2
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 9.2e-75 283.9 188 69.7
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 9.2e-75 283.9 188 69.7
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 9.2e-75 283.9 188 71.3
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 1.2e-74 283.5 189 69.8
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 1.2e-74 283.5 188 70.2
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 1.6e-74 283.1 188 69.1
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 1.6e-74 283.1 189 69.8
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.6e-74 283.1 188 70.2
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.7e-74 282.3 184 71.2
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.7e-74 282.3 188 68.6
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 7.8e-74 280.8 184 70.1
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 1.0e-73 280.4 187 69.5
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.3e-73 280.0 187 67.9
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.3e-73 280.0 187 67.9
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 3.0e-73 278.9 187 70.6
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 3.0e-73 278.9 187 70.1
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 3.0e-73 278.9 186 68.8
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 3.9e-73 278.5 203 67.0
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 5.1e-73 278.1 188 69.7
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 5.1e-73 278.1 186 69.9
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 8.6e-73 277.3 192 67.7
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.1e-72 276.9 187 66.8
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 1.5e-72 276.6 191 70.7
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.5e-72 276.6 188 70.7
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.9e-72 276.2 187 69.0
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 4.3e-72 275.0 187 70.1
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 5.6e-72 274.6 187 68.4
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 7.3e-72 274.2 188 67.0
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 7.3e-72 274.2 186 69.4
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 2.8e-71 272.3 192 67.2
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 2.8e-71 272.3 187 66.3
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.8e-71 272.3 187 66.3
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 2.8e-71 272.3 191 64.4
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 1.1e-70 270.4 191 68.6
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.1e-70 270.4 187 65.8
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.1e-70 270.4 187 69.0
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.4e-70 270.0 183 68.9
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 1.4e-70 270.0 190 67.4
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 1.8e-70 269.6 189 67.7
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 2.3e-70 269.2 189 67.7
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 2.3e-70 269.2 189 69.3
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 3.1e-70 268.9 189 69.8
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.0e-70 268.5 188 67.6
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 4.0e-70 268.5 187 68.4
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 5.2e-70 268.1 190 63.2
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 5.2e-70 268.1 184 64.7
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 6.8e-70 267.7 189 69.3
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 6.8e-70 267.7 192 63.5
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 1.2e-69 266.9 189 68.8
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 1.2e-69 266.9 189 67.2
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 1.2e-69 266.9 191 66.5
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 2.0e-69 266.2 191 68.1
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 3.4e-69 265.4 189 66.7
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 3.4e-69 265.4 189 66.7
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 5.8e-69 264.6 189 67.7
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 7.6e-69 264.2 188 63.8
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 7.6e-69 264.2 186 64.5
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.3e-68 263.5 190 66.8
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 1.3e-68 263.5 190 65.3
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 1.7e-68 263.1 188 67.6
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 2.9e-68 262.3 187 64.7
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 2.9e-68 262.3 219 59.4
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 8.4e-68 260.8 186 65.6
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 5.4e-67 258.1 188 62.8
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 4.6e-66 255.0 192 63.5
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 6.0e-66 254.6 188 66.0
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 1.7e-65 253.1 182 63.7
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 3.9e-65 251.9 184 62.0
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 5.1e-65 251.5 184 60.9
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.6e-65 251.1 184 60.9
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.1e-64 250.4 187 61.0
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.2e-63 246.9 192 62.0
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 2.1e-63 246.1 229 53.7
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.1e-62 243.8 187 61.5
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 2.0e-61 239.6 189 59.8
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 3.4e-61 238.8 175 65.7
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.3e-60 236.9 191 60.7
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.4e-60 234.6 184 61.4
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 8.4e-60 234.2 187 58.8
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.1e-59 233.8 188 59.0
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 5.4e-59 231.5 144 72.2
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 3.5e-58 228.8 185 59.5
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 2.3e-57 226.1 189 56.1
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.3e-57 226.1 185 57.8
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 2.5e-56 222.6 146 71.2
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.6e-55 218.8 183 59.0
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.1e-54 217.2 179 60.9
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.6e-53 212.6 188 57.4
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 2.6e-53 212.6 175 60.6
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.4e-53 211.8 184 54.9
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 6.4e-52 208.0 185 53.0
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 9.3e-51 204.1 183 54.1
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.1e-46 189.1 131 64.9
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 6.7e-33 144.8 111 63.1
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.0e-29 133.3 84 67.9
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.9e-27 126.7 109 52.3
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 5.5e-27 125.2 81 71.6
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.2e-23 113.2 101 55.4
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.9e-20 102.8 115 47.8
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 9.7e-16 87.8 95 48.4
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.1e-08 64.3 78 46.2
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 7.0e-06 55.1 186 28.0


User provided reference genes

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