Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 7.6e-106 387.1 188 100.0
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.3e-100 369.8 188 93.6
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.2e-100 369.0 188 93.6
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.9e-98 360.9 188 91.5
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 8.5e-97 357.1 188 91.0
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.4e-96 356.3 188 89.4
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 9.4e-96 353.6 188 88.3
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.2e-95 353.2 188 88.8
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 2.7e-95 352.1 188 88.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 6.1e-95 350.9 188 87.8
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 6.1e-95 350.9 188 87.8
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 6.7e-94 347.4 188 87.2
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 85.1
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.6
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 83.5
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 83.5
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 84.6
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 84.6
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 83.0
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.0e-90 335.9 187 85.0
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 83.5
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 83.5
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 84.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 83.0
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 83.0
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 83.0
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 82.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 83.5
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 83.0
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 5.0e-89 331.3 186 81.7
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 82.4
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.1e-88 330.1 186 80.6
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.9e-88 329.3 186 80.6
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 82.4
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.9
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.9
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.9
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.9
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.4
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.9
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 80.3
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.4
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.4
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.4
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 82.4
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 81.4
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 80.9
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 80.9
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 80.9
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.6e-87 325.1 186 79.0
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.6e-87 325.1 186 79.0
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.4
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 79.3
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 80.9
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.3
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 79.8
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.8e-86 322.8 190 81.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-86 322.8 190 81.1
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.4
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.0e-86 322.0 186 78.5
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 80.3
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.2e-86 321.2 169 88.8
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.5e-85 319.7 179 83.2
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 80.3
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 79.8
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 79.8
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 79.8
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 79.3
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 79.3
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 79.8
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 79.3
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 80.3
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.2
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.2
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.8
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 79.3
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 78.2
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 78.2
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 78.2
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 78.2
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 77.1
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 77.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 77.1
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.1
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 7.0e-83 310.8 180 80.6
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 76.1
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 76.6
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 76.1
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 77.1
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.1
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 76.1
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 6.5e-81 304.3 188 75.5
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-80 303.5 174 82.2
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 3.2e-80 302.0 188 75.0
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 76.6
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.5e-80 301.2 188 74.5
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 77.7
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 77.1
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 77.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 75.5
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 73.9
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 4.7e-79 298.1 188 75.0
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.0e-79 297.4 180 75.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 2.3e-78 295.8 189 75.1
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 73.7
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 5.7e-77 291.2 189 74.6
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 9.7e-77 290.4 189 75.7
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.7e-76 289.7 188 74.5
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.8e-76 288.9 189 74.6
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.1e-75 287.0 189 74.1
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.4e-75 286.6 189 74.6
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 4.1e-75 285.0 188 72.3
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 5.3e-75 284.6 190 71.6
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 7.0e-75 284.3 182 76.9
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 7.0e-75 284.3 188 69.7
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.5e-72 275.8 188 68.6
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.7e-71 271.6 179 71.5
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.8e-70 269.6 188 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 4.0e-70 268.5 188 64.9
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.2e-69 266.9 188 71.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 9.8e-69 263.8 189 66.1
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 9.8e-69 263.8 189 66.1
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.3e-68 263.5 179 69.8
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.3e-68 263.5 187 65.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.8e-68 262.3 189 65.6
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 2.4e-67 259.2 177 70.6
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 2.4e-67 259.2 187 65.8
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.4e-67 259.2 188 69.1
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.3e-65 253.4 188 68.1
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 3.8e-65 251.9 187 62.0
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 5.7e-61 238.0 188 58.5
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.7e-60 236.5 180 62.8
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.9e-56 223.0 165 68.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 5.6e-56 221.5 121 86.8
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.3e-54 216.1 188 59.6
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 6.6e-49 198.0 109 88.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.8e-46 189.9 187 49.7
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.9e-44 181.8 176 55.7
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 9.2e-43 177.6 115 73.0
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-41 173.7 188 51.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.6e-39 166.8 123 70.7
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 3.7e-36 155.6 128 57.0
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.2e-35 152.5 85 85.9
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.3e-33 147.1 78 89.7
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.9e-27 126.7 64 89.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 4.3e-24 115.5 92 65.2
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 9.3e-11 71.2 35 94.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 2.8e-07 59.7 43 58.1


User provided reference genes

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