Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 4.5e-200 701.0 355 100.0
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 3.9e-159 565.1 333 88.9
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 6.8e-156 554.3 357 80.7
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 2.7e-152 542.3 360 79.2
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 1.3e-151 540.0 355 80.3
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 1.2e-139 500.4 334 78.7
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.3e-138 496.9 372 70.4
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 3.2e-129 465.7 366 68.0
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 2.7e-128 462.6 354 69.5
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 6.0e-128 461.5 365 67.9
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.0e-127 460.7 360 68.3
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.9e-126 456.4 367 67.6
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.5e-126 456.1 360 68.1
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 9.6e-126 454.1 365 67.4
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 2.1e-125 453.0 363 65.6
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 2.8e-125 452.6 364 67.3
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 6.2e-125 451.4 361 67.0
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.4e-124 450.3 366 66.1
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 5.3e-124 448.4 315 72.7
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 9.0e-124 447.6 366 66.9
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 9.0e-124 447.6 366 65.8
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.5e-123 446.8 361 67.3
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 1.5e-123 446.8 368 65.5
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 2.6e-123 446.0 347 68.0
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 2.6e-123 446.0 361 65.4
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.4e-123 445.7 350 67.7
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 1.3e-122 443.7 362 66.0
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 1.7e-122 443.4 296 75.3
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 2.2e-122 443.0 335 68.1
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 4.9e-122 441.8 365 64.9
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 1.1e-121 440.7 352 66.5
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.1e-121 440.7 321 69.2
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.4e-121 440.3 336 68.2
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 3.2e-121 439.1 348 66.1
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 3.2e-121 439.1 369 64.2
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 4.2e-121 438.7 511 53.2
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.6e-120 436.8 293 73.0
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 2.1e-120 436.4 341 67.4
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 2.1e-120 436.4 368 64.1
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 2.7e-120 436.0 340 67.1
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 4.6e-120 435.3 327 66.7
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 4.6e-120 435.3 353 63.5
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 2.3e-119 433.0 323 68.4
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.0e-119 432.6 348 63.8
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 5.1e-119 431.8 332 65.7
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 5.1e-119 431.8 348 63.5
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 6.7e-119 431.4 367 64.3
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 6.7e-119 431.4 300 73.3
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 8.7e-119 431.0 346 65.0
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 1.1e-118 430.6 354 62.7
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 1.5e-118 430.3 354 62.7
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.5e-118 430.3 352 64.8
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 1.5e-118 430.3 360 65.0
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.9e-118 429.9 386 62.4
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 2.5e-118 429.5 236 93.6
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 2.5e-118 429.5 351 64.7
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 3.3e-118 429.1 317 67.8
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 3.3e-118 429.1 317 67.8
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 9.6e-118 427.6 317 67.5
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.3e-117 427.2 352 62.2
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 4.8e-117 425.2 341 65.1
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 6.2e-117 424.9 316 68.4
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 6.2e-117 424.9 342 65.5
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 8.2e-117 424.5 402 60.2
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 8.2e-117 424.5 323 67.2
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.1e-116 424.1 351 63.5
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.8e-116 423.3 324 68.8
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 3.1e-116 422.5 346 65.6
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 6.9e-116 421.4 534 49.8
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 1.2e-115 420.6 393 58.3
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 3.4e-115 419.1 318 67.6
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.4e-115 419.1 314 69.1
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.4e-115 419.1 287 77.4
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 7.6e-115 417.9 286 72.7
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 2.2e-114 416.4 318 64.8
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 2.9e-114 416.0 317 66.9
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 6.5e-114 414.8 361 61.8
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 2.5e-113 412.9 355 62.5
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 2.3e-111 406.4 265 77.4
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.1e-110 404.1 298 70.8
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 4.3e-110 402.1 350 62.6
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 3.7e-109 399.1 288 68.1
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 3.1e-108 396.0 281 70.8
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.2e-107 394.0 320 63.4
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 3.8e-106 389.0 336 61.0
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 8.5e-106 387.9 359 59.6
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.4e-100 370.5 265 68.3
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.4e-97 360.5 369 57.5
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 2.5e-97 359.8 363 56.5
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.1e-94 350.9 424 51.7
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.2e-93 346.7 565 40.7
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 1.4e-92 344.0 225 76.0
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.5e-91 340.5 224 75.4
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 4.2e-89 332.4 294 57.8
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 2.7e-88 329.7 288 58.0
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.9e-87 325.9 232 70.7
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 6.7e-87 325.1 201 85.6
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 2.6e-86 323.2 209 75.6
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 5.3e-84 315.5 195 77.9
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 9.1e-84 314.7 301 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 7.7e-83 311.6 289 55.0
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.0e-79 299.7 181 79.6
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.3e-74 284.3 394 46.2
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 5.0e-74 282.3 170 85.9
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 8.6e-66 255.0 202 73.3
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.5e-65 254.2 161 80.1
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.9e-58 229.9 195 61.0
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 8.6e-58 228.4 298 43.6
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 2.2e-53 213.8 201 58.7
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 3.2e-52 209.9 234 53.8
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 3.0e-50 203.4 216 56.9
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 4.3e-49 199.5 193 50.8
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 1.2e-48 198.0 312 39.1
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 9.2e-44 181.8 209 53.1
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.5e-41 171.8 121 76.9
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 3.2e-28 130.2 105 60.0
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 2.7e-27 127.1 101 65.3
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.5e-25 121.3 82 72.0
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.5e-25 121.3 82 72.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 4.4e-22 109.8 92 58.7
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 1.0e-18 98.6 55 87.3
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 2.1e-16 90.9 64 70.3
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 2.6e-14 84.0 77 50.6
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 3.4e-14 83.6 108 45.4
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 7.6e-14 82.4 155 32.9
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 2.7e-11 73.9 44 88.6
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-10 71.6 58 62.1
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-10 71.6 58 62.1
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-10 71.6 58 62.1
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-10 71.6 58 62.1
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-10 71.6 58 62.1
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-10 71.2 58 62.1
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.1e-10 69.7 58 60.3
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 8.7e-10 68.9 58 60.3
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 8.1e-08 62.4 38 68.4


User provided reference genes

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