Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 2.4e-54 215.3 113 100.0
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.9e-36 155.2 90 90.0
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.2e-34 149.8 98 82.7
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.8e-34 148.7 98 81.6
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 8.0e-34 147.1 88 85.2
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.0e-33 146.7 88 85.2
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 8.8e-33 143.7 85 85.9
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 8.8e-33 143.7 85 85.9
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.2e-32 143.3 98 76.5
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.0e-32 142.5 85 83.5
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.6e-32 142.1 97 76.3
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 4.4e-32 141.4 98 76.5
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.7e-32 141.0 98 78.6
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 7.5e-32 140.6 87 82.8
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 7.5e-32 140.6 90 81.1
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 9.8e-32 140.2 98 74.5
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-31 139.8 98 78.6
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-31 139.8 98 78.6
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.3e-31 139.8 88 83.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.3e-31 139.8 98 73.5
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.7e-31 139.4 86 83.7
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.7e-31 139.4 85 82.4
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.2e-31 139.0 84 84.5
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 2.8e-31 138.7 96 76.0
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.7e-31 138.3 94 75.5
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.9e-31 137.9 98 74.5
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 4.9e-31 137.9 88 79.5
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 6.3e-31 137.5 98 74.5
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 8.3e-31 137.1 79 89.9
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.1e-30 136.7 86 81.4
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.8e-30 136.0 77 90.9
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.4e-30 135.6 90 77.8
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.1e-30 135.2 82 85.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 7.0e-30 134.0 84 81.0
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 9.2e-30 133.7 86 77.9
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 9.2e-30 133.7 91 74.7
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 9.2e-30 133.7 92 76.1
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.2e-29 133.3 99 66.7
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.2e-29 133.3 98 71.4
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.6e-29 132.9 99 75.8
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.6e-29 132.9 89 77.5
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.0e-29 132.5 86 76.7
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.7e-29 132.1 101 72.3
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.5e-29 131.7 86 79.1
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.5e-29 131.7 89 77.5
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 3.5e-29 131.7 79 83.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 4.5e-29 131.3 99 68.7
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 4.5e-29 131.3 89 77.5
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 4.5e-29 131.3 97 71.1
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 4.5e-29 131.3 96 72.9
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 7.8e-29 130.6 80 86.2
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.0e-28 130.2 99 66.7
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.0e-28 130.2 81 84.0
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.0e-28 130.2 81 84.0
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.3e-28 129.8 86 79.1
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.3e-28 129.8 96 69.8
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.3e-28 129.8 96 70.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.7e-28 129.4 90 73.3
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.7e-28 129.4 86 76.7
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.7e-28 129.4 94 71.3
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.7e-28 129.4 98 68.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.3e-28 129.0 79 84.8
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.3e-28 129.0 99 68.7
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-28 128.6 86 74.4
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-28 128.6 98 69.4
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.9e-28 128.6 86 77.9
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.9e-28 128.6 86 77.9
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 3.8e-28 128.3 86 77.9
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 5.0e-28 127.9 96 69.8
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 5.0e-28 127.9 96 69.8
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 8.6e-28 127.1 89 68.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 8.6e-28 127.1 89 75.3
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.5e-27 126.3 86 73.3
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.5e-27 126.3 83 78.3
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.9e-27 125.9 86 74.4
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.5e-27 125.6 89 73.0
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.5e-27 125.6 86 75.6
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.3e-27 124.8 84 73.8
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.6e-27 124.4 84 76.2
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 5.6e-27 124.4 80 82.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 5.6e-27 124.4 98 65.3
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 7.3e-27 124.0 96 67.7
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.3e-27 124.0 98 72.4
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 7.3e-27 124.0 84 75.0
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 7.3e-27 124.0 95 71.6
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 9.5e-27 123.6 96 65.6
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 9.5e-27 123.6 96 66.7
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 9.5e-27 123.6 86 73.3
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 9.5e-27 123.6 83 73.5
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.2e-26 123.2 79 81.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.2e-26 123.2 86 73.3
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.6e-26 122.9 93 69.9
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.6e-26 122.9 96 72.9
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.6e-26 122.9 79 77.2
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.1e-26 122.5 73 86.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.8e-26 122.1 98 69.4
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.8e-26 122.1 98 69.4
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.8e-26 122.1 98 69.4
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.8e-26 122.1 84 76.2
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 2.8e-26 122.1 96 66.7
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.6e-26 121.7 88 70.5
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.6e-26 121.7 96 65.6
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 4.7e-26 121.3 80 76.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 4.7e-26 121.3 90 67.8
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.4e-25 119.8 95 67.4
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.8e-25 119.4 80 78.8
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.8e-25 119.4 78 80.8
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 2.3e-25 119.0 78 79.5
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.2e-25 117.9 82 73.2
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 6.8e-25 117.5 95 64.2
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 6.8e-25 117.5 95 64.2
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.8e-25 117.5 95 64.2
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 6.8e-25 117.5 78 80.8
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 6.8e-25 117.5 83 71.1
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 8.9e-25 117.1 95 64.2
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.0e-24 115.9 85 70.6
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.6e-24 115.5 77 76.6
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 3.4e-24 115.2 95 64.2
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 3.4e-24 115.2 95 64.2
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 3.4e-24 115.2 95 64.2
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 3.4e-24 115.2 95 64.2
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.4e-24 115.2 86 72.1
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.7e-24 114.4 86 72.1
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 6.4e-23 110.9 86 70.9
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.1e-22 110.2 77 72.7
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.4e-22 109.8 82 67.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.4e-22 109.8 82 67.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.4e-22 109.8 82 67.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 7.0e-22 107.5 83 62.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.3e-20 102.4 81 67.9
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 9.5e-19 97.1 78 65.4
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 8.0e-18 94.0 83 61.4
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.3e-17 92.4 79 59.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.3e-17 92.4 73 68.5
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 5.8e-16 87.8 56 76.8
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 9.8e-16 87.0 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 9.8e-16 87.0 76 63.2
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.9e-14 82.8 95 52.6
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.0e-14 80.9 56 71.4
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.0e-14 80.9 56 71.4
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.6e-13 78.2 57 66.7
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.1e-11 73.6 51 70.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 2.5e-11 72.4 40 87.5
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.2e-10 70.1 50 68.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.7e-10 68.2 83 45.8


User provided reference genes

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